Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00740 and ABZR87_RS00745 are separated by 156 nucleotides ABZR87_RS00745 and ABZR87_RS00750 are separated by 14 nucleotides ABZR87_RS00750 and ABZR87_RS00755 are separated by 119 nucleotides
ABZR87_RS00740: ABZR87_RS00740 - adenylate kinase, at 149,556 to 150,224
_RS00740
ABZR87_RS00745: ABZR87_RS00745 - 3-hydroxyacyl-CoA dehydrogenase, at 150,381 to 151,139
_RS00745
ABZR87_RS00750: ABZR87_RS00750 - LysR family transcriptional regulator, at 151,154 to 152,047
_RS00750
ABZR87_RS00755: ABZR87_RS00755 - bile acid:sodium symporter family protein, at 152,167 to 153,198
_RS00755
Position (kb) 151
152
153 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 150.308 kb on + strand at 150.309 kb on - strand at 150.313 kb on + strand at 150.313 kb on + strand at 150.313 kb on + strand at 150.313 kb on + strand at 150.313 kb on + strand at 150.313 kb on + strand at 150.313 kb on + strand at 150.313 kb on + strand at 150.313 kb on + strand at 150.313 kb on + strand at 150.314 kb on - strand at 150.314 kb on - strand at 150.314 kb on - strand at 150.314 kb on - strand at 150.314 kb on - strand at 150.314 kb on - strand at 150.314 kb on - strand at 150.314 kb on - strand at 150.314 kb on - strand at 150.314 kb on - strand at 150.314 kb on - strand at 150.314 kb on - strand at 150.314 kb on - strand at 150.314 kb on - strand at 150.339 kb on - strand at 150.400 kb on + strand at 150.400 kb on + strand at 150.400 kb on + strand at 150.401 kb on - strand at 150.401 kb on - strand at 150.401 kb on - strand at 150.441 kb on - strand at 150.636 kb on - strand, within ABZR87_RS00745 at 150.853 kb on - strand, within ABZR87_RS00745 at 151.048 kb on - strand, within ABZR87_RS00745 at 151.137 kb on + strand at 151.390 kb on + strand, within ABZR87_RS00750 at 151.390 kb on + strand, within ABZR87_RS00750 at 151.390 kb on + strand, within ABZR87_RS00750 at 151.390 kb on + strand, within ABZR87_RS00750 at 151.391 kb on - strand, within ABZR87_RS00750 at 151.614 kb on - strand, within ABZR87_RS00750 at 151.716 kb on + strand, within ABZR87_RS00750 at 151.716 kb on + strand, within ABZR87_RS00750 at 151.716 kb on + strand, within ABZR87_RS00750 at 151.716 kb on + strand, within ABZR87_RS00750 at 151.716 kb on + strand, within ABZR87_RS00750 at 151.716 kb on + strand, within ABZR87_RS00750 at 151.716 kb on + strand, within ABZR87_RS00750 at 151.717 kb on - strand, within ABZR87_RS00750 at 151.717 kb on - strand, within ABZR87_RS00750 at 151.717 kb on - strand, within ABZR87_RS00750 at 152.086 kb on - strand at 152.095 kb on - strand at 152.110 kb on + strand at 152.111 kb on - strand at 152.117 kb on + strand at 152.142 kb on + strand at 152.143 kb on - strand at 152.143 kb on - strand at 152.146 kb on + strand at 152.147 kb on - strand at 152.147 kb on - strand at 152.147 kb on - strand at 152.183 kb on + strand at 152.183 kb on + strand at 152.183 kb on + strand at 152.184 kb on - strand at 152.184 kb on - strand at 152.184 kb on - strand at 152.500 kb on + strand, within ABZR87_RS00755 at 152.500 kb on + strand, within ABZR87_RS00755 at 152.500 kb on + strand, within ABZR87_RS00755 at 152.501 kb on - strand, within ABZR87_RS00755 at 152.501 kb on - strand, within ABZR87_RS00755 at 152.501 kb on - strand, within ABZR87_RS00755 at 152.863 kb on + strand, within ABZR87_RS00755 at 152.864 kb on - strand, within ABZR87_RS00755
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 150,308 + -2.6 150,309 - -1.1 150,313 + +3.0 150,313 + -1.4 150,313 + -0.5 150,313 + -0.2 150,313 + +2.3 150,313 + -0.5 150,313 + +0.9 150,313 + +5.6 150,313 + -0.4 150,313 + -0.6 150,314 - -2.6 150,314 - -2.3 150,314 - -0.2 150,314 - +0.1 150,314 - +1.6 150,314 - +2.3 150,314 - +0.2 150,314 - -0.4 150,314 - -0.3 150,314 - -1.5 150,314 - -0.1 150,314 - -1.2 150,314 - -0.8 150,314 - +0.7 150,339 - +1.0 150,400 + -2.1 150,400 + +3.3 150,400 + -1.4 150,401 - -0.6 150,401 - +1.0 150,401 - -0.0 150,441 - -0.1 150,636 - ABZR87_RS00745 0.34 +1.0 150,853 - ABZR87_RS00745 0.62 +4.3 151,048 - ABZR87_RS00745 0.88 -0.3 151,137 + +2.5 151,390 + ABZR87_RS00750 0.26 -0.6 151,390 + ABZR87_RS00750 0.26 +0.5 151,390 + ABZR87_RS00750 0.26 +1.5 151,390 + ABZR87_RS00750 0.26 +0.1 151,391 - ABZR87_RS00750 0.27 -2.9 151,614 - ABZR87_RS00750 0.51 -1.5 151,716 + ABZR87_RS00750 0.63 +0.2 151,716 + ABZR87_RS00750 0.63 +0.0 151,716 + ABZR87_RS00750 0.63 +2.1 151,716 + ABZR87_RS00750 0.63 -2.5 151,716 + ABZR87_RS00750 0.63 +1.0 151,716 + ABZR87_RS00750 0.63 -2.6 151,716 + ABZR87_RS00750 0.63 +1.5 151,717 - ABZR87_RS00750 0.63 +0.8 151,717 - ABZR87_RS00750 0.63 -0.4 151,717 - ABZR87_RS00750 0.63 +1.8 152,086 - +1.0 152,095 - -1.2 152,110 + -0.2 152,111 - +1.4 152,117 + +1.1 152,142 + -0.7 152,143 - +0.3 152,143 - -0.8 152,146 + -0.3 152,147 - +1.0 152,147 - -0.8 152,147 - -1.1 152,183 + -1.5 152,183 + +0.8 152,183 + +0.6 152,184 - -0.0 152,184 - -0.4 152,184 - -1.4 152,500 + ABZR87_RS00755 0.32 +3.0 152,500 + ABZR87_RS00755 0.32 +0.7 152,500 + ABZR87_RS00755 0.32 -1.0 152,501 - ABZR87_RS00755 0.32 -0.2 152,501 - ABZR87_RS00755 0.32 -0.8 152,501 - ABZR87_RS00755 0.32 -2.3 152,863 + ABZR87_RS00755 0.67 +1.3 152,864 - ABZR87_RS00755 0.68 +2.3
Or see this region's nucleotide sequence