Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00400 and ABZR87_RS00405 overlap by 1 nucleotides ABZR87_RS00405 and ABZR87_RS00410 are separated by 7 nucleotides ABZR87_RS00410 and ABZR87_RS00415 are separated by 3 nucleotides ABZR87_RS00415 and ABZR87_RS00420 are separated by 149 nucleotides
ABZR87_RS00400: ABZR87_RS00400 - isoleucine--tRNA ligase, at 82,430 to 85,309
_RS00400
ABZR87_RS00405: ABZR87_RS00405 - signal peptidase II, at 85,309 to 85,833
_RS00405
ABZR87_RS00410: ABZR87_RS00410 - DUF4180 domain-containing protein, at 85,841 to 86,218
_RS00410
ABZR87_RS00415: ABZR87_RS00415 - YdcF family protein, at 86,222 to 86,800
_RS00415
ABZR87_RS00420: ABZR87_RS00420 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC, at 86,950 to 88,155
_RS00420
Position (kb) 85
86
87 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 86.057 kb on + strand, within ABZR87_RS00410 at 86.058 kb on - strand, within ABZR87_RS00410 at 86.058 kb on - strand, within ABZR87_RS00410 at 86.058 kb on - strand, within ABZR87_RS00410 at 86.233 kb on - strand at 86.244 kb on + strand at 86.244 kb on + strand at 86.245 kb on - strand at 86.262 kb on + strand at 86.263 kb on - strand at 86.263 kb on - strand at 86.263 kb on - strand at 86.263 kb on - strand at 86.289 kb on + strand, within ABZR87_RS00415 at 86.289 kb on + strand, within ABZR87_RS00415 at 86.289 kb on + strand, within ABZR87_RS00415 at 86.289 kb on + strand, within ABZR87_RS00415 at 86.290 kb on - strand, within ABZR87_RS00415 at 86.327 kb on + strand, within ABZR87_RS00415 at 86.415 kb on - strand, within ABZR87_RS00415 at 86.415 kb on - strand, within ABZR87_RS00415 at 86.415 kb on - strand, within ABZR87_RS00415 at 86.415 kb on - strand, within ABZR87_RS00415 at 86.601 kb on + strand, within ABZR87_RS00415 at 86.602 kb on - strand, within ABZR87_RS00415 at 86.719 kb on + strand, within ABZR87_RS00415 at 86.719 kb on + strand, within ABZR87_RS00415 at 86.719 kb on + strand, within ABZR87_RS00415 at 86.720 kb on - strand, within ABZR87_RS00415 at 86.720 kb on - strand, within ABZR87_RS00415 at 86.720 kb on - strand, within ABZR87_RS00415 at 86.720 kb on - strand, within ABZR87_RS00415 at 86.777 kb on + strand at 86.861 kb on - strand at 86.902 kb on + strand at 86.902 kb on + strand at 86.903 kb on - strand at 86.903 kb on - strand at 86.903 kb on - strand at 86.917 kb on + strand at 86.917 kb on + strand at 86.918 kb on + strand at 86.949 kb on + strand at 86.949 kb on + strand at 86.950 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 86,057 + ABZR87_RS00410 0.57 -1.2 86,058 - ABZR87_RS00410 0.57 +0.5 86,058 - ABZR87_RS00410 0.57 +0.2 86,058 - ABZR87_RS00410 0.57 -0.9 86,233 - +0.1 86,244 + -0.5 86,244 + +1.4 86,245 - -0.9 86,262 + +6.0 86,263 - -1.1 86,263 - +0.8 86,263 - -0.2 86,263 - -2.5 86,289 + ABZR87_RS00415 0.12 +2.2 86,289 + ABZR87_RS00415 0.12 +0.1 86,289 + ABZR87_RS00415 0.12 -0.3 86,289 + ABZR87_RS00415 0.12 +1.4 86,290 - ABZR87_RS00415 0.12 -1.0 86,327 + ABZR87_RS00415 0.18 +0.4 86,415 - ABZR87_RS00415 0.33 +1.1 86,415 - ABZR87_RS00415 0.33 -0.1 86,415 - ABZR87_RS00415 0.33 +0.2 86,415 - ABZR87_RS00415 0.33 +0.2 86,601 + ABZR87_RS00415 0.65 +0.0 86,602 - ABZR87_RS00415 0.66 +0.3 86,719 + ABZR87_RS00415 0.86 +0.1 86,719 + ABZR87_RS00415 0.86 -0.5 86,719 + ABZR87_RS00415 0.86 -0.3 86,720 - ABZR87_RS00415 0.86 +0.7 86,720 - ABZR87_RS00415 0.86 -1.5 86,720 - ABZR87_RS00415 0.86 +1.6 86,720 - ABZR87_RS00415 0.86 -0.9 86,777 + -2.5 86,861 - +0.8 86,902 + -0.9 86,902 + -1.7 86,903 - +1.7 86,903 - +1.3 86,903 - +0.6 86,917 + -0.0 86,917 + -1.3 86,918 + +0.0 86,949 + +0.1 86,949 + -0.8 86,950 - +0.7
Or see this region's nucleotide sequence