Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5820

Experiment: sodium iodate 0.005 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5819 and Pf6N2E2_5820 are separated by 183 nucleotidesPf6N2E2_5820 and Pf6N2E2_5821 are separated by 107 nucleotides Pf6N2E2_5819 - Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p, at 6,636,808 to 6,637,716 _5819 Pf6N2E2_5820 - FIG00957914: hypothetical protein, at 6,637,900 to 6,638,688 _5820 Pf6N2E2_5821 - Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase, at 6,638,796 to 6,639,758 _5821 Position (kb) 6637 6638 6639Strain fitness (log2 ratio) -2 -1 0 1 2at 6636.974 kb on - strand, within Pf6N2E2_5819at 6637.060 kb on + strand, within Pf6N2E2_5819at 6637.060 kb on + strand, within Pf6N2E2_5819at 6637.240 kb on + strand, within Pf6N2E2_5819at 6637.240 kb on + strand, within Pf6N2E2_5819at 6637.277 kb on + strand, within Pf6N2E2_5819at 6637.278 kb on - strand, within Pf6N2E2_5819at 6637.414 kb on + strand, within Pf6N2E2_5819at 6637.414 kb on + strand, within Pf6N2E2_5819at 6637.415 kb on - strand, within Pf6N2E2_5819at 6637.415 kb on - strand, within Pf6N2E2_5819at 6637.415 kb on - strand, within Pf6N2E2_5819at 6637.454 kb on - strand, within Pf6N2E2_5819at 6637.556 kb on + strand, within Pf6N2E2_5819at 6637.556 kb on + strand, within Pf6N2E2_5819at 6637.557 kb on - strand, within Pf6N2E2_5819at 6638.189 kb on + strand, within Pf6N2E2_5820at 6638.190 kb on - strand, within Pf6N2E2_5820at 6638.190 kb on - strand, within Pf6N2E2_5820at 6638.320 kb on - strand, within Pf6N2E2_5820at 6638.516 kb on + strand, within Pf6N2E2_5820at 6638.688 kb on + strandat 6638.688 kb on + strandat 6638.788 kb on - strandat 6638.875 kb on + strandat 6638.875 kb on + strandat 6638.875 kb on + strandat 6638.875 kb on + strandat 6638.875 kb on + strandat 6638.875 kb on + strandat 6638.876 kb on - strandat 6638.930 kb on + strand, within Pf6N2E2_5821at 6639.091 kb on + strand, within Pf6N2E2_5821at 6639.092 kb on - strand, within Pf6N2E2_5821at 6639.092 kb on - strand, within Pf6N2E2_5821at 6639.092 kb on - strand, within Pf6N2E2_5821at 6639.099 kb on + strand, within Pf6N2E2_5821at 6639.100 kb on - strand, within Pf6N2E2_5821at 6639.100 kb on - strand, within Pf6N2E2_5821at 6639.100 kb on - strand, within Pf6N2E2_5821at 6639.406 kb on + strand, within Pf6N2E2_5821at 6639.406 kb on + strand, within Pf6N2E2_5821at 6639.406 kb on + strand, within Pf6N2E2_5821at 6639.406 kb on + strand, within Pf6N2E2_5821at 6639.406 kb on + strand, within Pf6N2E2_5821at 6639.406 kb on + strand, within Pf6N2E2_5821at 6639.406 kb on + strand, within Pf6N2E2_5821at 6639.406 kb on + strand, within Pf6N2E2_5821at 6639.406 kb on + strand, within Pf6N2E2_5821at 6639.407 kb on - strand, within Pf6N2E2_5821at 6639.407 kb on - strand, within Pf6N2E2_5821at 6639.407 kb on - strand, within Pf6N2E2_5821at 6639.407 kb on - strand, within Pf6N2E2_5821at 6639.407 kb on - strand, within Pf6N2E2_5821at 6639.573 kb on - strand, within Pf6N2E2_5821

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium iodate 0.005 M
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6,636,974 - Pf6N2E2_5819 0.18 -0.8
6,637,060 + Pf6N2E2_5819 0.28 +1.0
6,637,060 + Pf6N2E2_5819 0.28 +0.0
6,637,240 + Pf6N2E2_5819 0.48 -0.4
6,637,240 + Pf6N2E2_5819 0.48 -0.4
6,637,277 + Pf6N2E2_5819 0.52 -0.2
6,637,278 - Pf6N2E2_5819 0.52 -2.2
6,637,414 + Pf6N2E2_5819 0.67 +0.1
6,637,414 + Pf6N2E2_5819 0.67 -0.1
6,637,415 - Pf6N2E2_5819 0.67 +0.4
6,637,415 - Pf6N2E2_5819 0.67 +0.5
6,637,415 - Pf6N2E2_5819 0.67 -1.4
6,637,454 - Pf6N2E2_5819 0.71 +0.4
6,637,556 + Pf6N2E2_5819 0.82 -0.2
6,637,556 + Pf6N2E2_5819 0.82 +0.1
6,637,557 - Pf6N2E2_5819 0.82 -0.7
6,638,189 + Pf6N2E2_5820 0.37 -1.6
6,638,190 - Pf6N2E2_5820 0.37 -1.9
6,638,190 - Pf6N2E2_5820 0.37 -0.3
6,638,320 - Pf6N2E2_5820 0.53 -0.4
6,638,516 + Pf6N2E2_5820 0.78 +0.6
6,638,688 + -0.3
6,638,688 + -0.7
6,638,788 - -0.4
6,638,875 + +0.6
6,638,875 + +0.3
6,638,875 + +0.4
6,638,875 + +1.9
6,638,875 + -0.4
6,638,875 + +0.1
6,638,876 - -0.8
6,638,930 + Pf6N2E2_5821 0.14 -0.3
6,639,091 + Pf6N2E2_5821 0.31 +0.9
6,639,092 - Pf6N2E2_5821 0.31 -0.3
6,639,092 - Pf6N2E2_5821 0.31 -0.3
6,639,092 - Pf6N2E2_5821 0.31 +0.4
6,639,099 + Pf6N2E2_5821 0.31 +0.3
6,639,100 - Pf6N2E2_5821 0.32 -0.4
6,639,100 - Pf6N2E2_5821 0.32 -0.4
6,639,100 - Pf6N2E2_5821 0.32 +1.3
6,639,406 + Pf6N2E2_5821 0.63 +0.4
6,639,406 + Pf6N2E2_5821 0.63 -0.9
6,639,406 + Pf6N2E2_5821 0.63 +0.3
6,639,406 + Pf6N2E2_5821 0.63 -0.1
6,639,406 + Pf6N2E2_5821 0.63 -1.5
6,639,406 + Pf6N2E2_5821 0.63 -0.5
6,639,406 + Pf6N2E2_5821 0.63 -0.1
6,639,406 + Pf6N2E2_5821 0.63 +1.9
6,639,406 + Pf6N2E2_5821 0.63 -0.4
6,639,407 - Pf6N2E2_5821 0.63 +0.0
6,639,407 - Pf6N2E2_5821 0.63 -0.5
6,639,407 - Pf6N2E2_5821 0.63 -0.9
6,639,407 - Pf6N2E2_5821 0.63 +0.1
6,639,407 - Pf6N2E2_5821 0.63 +0.6
6,639,573 - Pf6N2E2_5821 0.81 +0.1

Or see this region's nucleotide sequence