Experiment: sodium iodate 0.005 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5508 and Pf6N2E2_5509 are separated by 125 nucleotides Pf6N2E2_5509 and Pf6N2E2_5510 are separated by 4 nucleotides Pf6N2E2_5510 and Pf6N2E2_5511 overlap by 4 nucleotides Pf6N2E2_5511 and Pf6N2E2_5512 are separated by 16 nucleotides
Pf6N2E2_5508 - Formyltetrahydrofolate deformylase (EC 3.5.1.10), at 6,325,636 to 6,326,484
_5508
Pf6N2E2_5509 - FIG00955586: hypothetical protein, at 6,326,610 to 6,326,783
_5509
Pf6N2E2_5510 - FIG00955324: hypothetical protein, at 6,326,788 to 6,327,783
_5510
Pf6N2E2_5511 - FIG00955875: hypothetical protein, at 6,327,780 to 6,328,547
_5511
Pf6N2E2_5512 - glycosyl transferase, group 1 family protein, at 6,328,564 to 6,329,655
_5512
Position (kb)
6326
6327
6328 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6325.872 kb on + strand, within Pf6N2E2_5508 at 6326.183 kb on - strand, within Pf6N2E2_5508 at 6326.399 kb on + strand, within Pf6N2E2_5508 at 6326.528 kb on - strand at 6326.540 kb on + strand at 6326.541 kb on - strand at 6326.541 kb on - strand at 6326.541 kb on - strand at 6326.541 kb on - strand at 6326.749 kb on + strand, within Pf6N2E2_5509 at 6326.749 kb on + strand, within Pf6N2E2_5509 at 6326.750 kb on - strand, within Pf6N2E2_5509 at 6326.750 kb on - strand, within Pf6N2E2_5509 at 6326.750 kb on - strand, within Pf6N2E2_5509 at 6326.750 kb on - strand, within Pf6N2E2_5509 at 6326.750 kb on - strand, within Pf6N2E2_5509 at 6326.806 kb on + strand at 6326.870 kb on + strand at 6326.871 kb on - strand at 6326.871 kb on - strand at 6326.876 kb on + strand at 6326.877 kb on - strand at 6326.877 kb on - strand at 6326.879 kb on + strand at 6326.879 kb on + strand at 6326.879 kb on + strand at 6326.879 kb on + strand at 6326.879 kb on + strand at 6326.880 kb on - strand at 6327.286 kb on + strand, within Pf6N2E2_5510 at 6327.287 kb on - strand, within Pf6N2E2_5510 at 6327.380 kb on + strand, within Pf6N2E2_5510 at 6327.381 kb on - strand, within Pf6N2E2_5510 at 6327.883 kb on + strand, within Pf6N2E2_5511 at 6327.884 kb on - strand, within Pf6N2E2_5511 at 6327.884 kb on - strand, within Pf6N2E2_5511 at 6327.900 kb on - strand, within Pf6N2E2_5511 at 6328.064 kb on - strand, within Pf6N2E2_5511 at 6328.087 kb on + strand, within Pf6N2E2_5511 at 6328.087 kb on + strand, within Pf6N2E2_5511 at 6328.087 kb on + strand, within Pf6N2E2_5511 at 6328.087 kb on + strand, within Pf6N2E2_5511 at 6328.087 kb on + strand, within Pf6N2E2_5511 at 6328.175 kb on - strand, within Pf6N2E2_5511 at 6328.237 kb on + strand, within Pf6N2E2_5511 at 6328.237 kb on + strand, within Pf6N2E2_5511 at 6328.238 kb on - strand, within Pf6N2E2_5511 at 6328.238 kb on - strand, within Pf6N2E2_5511 at 6328.238 kb on - strand, within Pf6N2E2_5511 at 6328.238 kb on - strand, within Pf6N2E2_5511 at 6328.258 kb on + strand, within Pf6N2E2_5511 at 6328.258 kb on + strand, within Pf6N2E2_5511 at 6328.258 kb on + strand, within Pf6N2E2_5511 at 6328.258 kb on + strand, within Pf6N2E2_5511 at 6328.258 kb on + strand, within Pf6N2E2_5511 at 6328.258 kb on + strand, within Pf6N2E2_5511 at 6328.258 kb on + strand, within Pf6N2E2_5511 at 6328.259 kb on - strand, within Pf6N2E2_5511 at 6328.259 kb on - strand, within Pf6N2E2_5511 at 6328.259 kb on - strand, within Pf6N2E2_5511 at 6328.318 kb on + strand, within Pf6N2E2_5511 at 6328.318 kb on + strand, within Pf6N2E2_5511 at 6328.318 kb on + strand, within Pf6N2E2_5511 at 6328.318 kb on + strand, within Pf6N2E2_5511 at 6328.318 kb on + strand, within Pf6N2E2_5511 at 6328.318 kb on + strand, within Pf6N2E2_5511 at 6328.318 kb on + strand, within Pf6N2E2_5511 at 6328.319 kb on - strand, within Pf6N2E2_5511 at 6328.319 kb on - strand, within Pf6N2E2_5511 at 6328.319 kb on - strand, within Pf6N2E2_5511 at 6328.319 kb on - strand, within Pf6N2E2_5511 at 6328.319 kb on - strand, within Pf6N2E2_5511 at 6328.319 kb on - strand, within Pf6N2E2_5511 at 6328.444 kb on - strand, within Pf6N2E2_5511 at 6328.444 kb on - strand, within Pf6N2E2_5511 at 6328.484 kb on - strand at 6328.524 kb on + strand at 6328.525 kb on - strand at 6328.525 kb on - strand at 6328.607 kb on + strand at 6328.607 kb on + strand at 6328.607 kb on + strand at 6328.607 kb on + strand at 6328.608 kb on - strand at 6328.608 kb on - strand at 6328.610 kb on + strand at 6328.611 kb on - strand at 6328.611 kb on - strand at 6328.649 kb on + strand at 6328.649 kb on + strand at 6328.650 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction sodium iodate 0.005 M remove 6,325,872 + Pf6N2E2_5508 0.28 -1.0 6,326,183 - Pf6N2E2_5508 0.64 -0.0 6,326,399 + Pf6N2E2_5508 0.90 -0.3 6,326,528 - -0.7 6,326,540 + -1.0 6,326,541 - +1.6 6,326,541 - +0.8 6,326,541 - +0.4 6,326,541 - -0.6 6,326,749 + Pf6N2E2_5509 0.80 +1.0 6,326,749 + Pf6N2E2_5509 0.80 -1.9 6,326,750 - Pf6N2E2_5509 0.80 +0.2 6,326,750 - Pf6N2E2_5509 0.80 -0.9 6,326,750 - Pf6N2E2_5509 0.80 -0.0 6,326,750 - Pf6N2E2_5509 0.80 +0.8 6,326,750 - Pf6N2E2_5509 0.80 +0.1 6,326,806 + -0.8 6,326,870 + +0.9 6,326,871 - -0.2 6,326,871 - -0.6 6,326,876 + +0.1 6,326,877 - +0.1 6,326,877 - +0.0 6,326,879 + +1.2 6,326,879 + -0.3 6,326,879 + -0.3 6,326,879 + +0.1 6,326,879 + +0.6 6,326,880 - +0.0 6,327,286 + Pf6N2E2_5510 0.50 -0.2 6,327,287 - Pf6N2E2_5510 0.50 -0.5 6,327,380 + Pf6N2E2_5510 0.59 -0.3 6,327,381 - Pf6N2E2_5510 0.60 -2.1 6,327,883 + Pf6N2E2_5511 0.13 +0.8 6,327,884 - Pf6N2E2_5511 0.14 -1.0 6,327,884 - Pf6N2E2_5511 0.14 -0.8 6,327,900 - Pf6N2E2_5511 0.16 -0.7 6,328,064 - Pf6N2E2_5511 0.37 -1.4 6,328,087 + Pf6N2E2_5511 0.40 -0.9 6,328,087 + Pf6N2E2_5511 0.40 +0.3 6,328,087 + Pf6N2E2_5511 0.40 -0.7 6,328,087 + Pf6N2E2_5511 0.40 +0.4 6,328,087 + Pf6N2E2_5511 0.40 +0.3 6,328,175 - Pf6N2E2_5511 0.51 +0.7 6,328,237 + Pf6N2E2_5511 0.60 -0.7 6,328,237 + Pf6N2E2_5511 0.60 -1.4 6,328,238 - Pf6N2E2_5511 0.60 +0.4 6,328,238 - Pf6N2E2_5511 0.60 +1.3 6,328,238 - Pf6N2E2_5511 0.60 +0.4 6,328,238 - Pf6N2E2_5511 0.60 +1.8 6,328,258 + Pf6N2E2_5511 0.62 -0.7 6,328,258 + Pf6N2E2_5511 0.62 -0.4 6,328,258 + Pf6N2E2_5511 0.62 -1.8 6,328,258 + Pf6N2E2_5511 0.62 +0.6 6,328,258 + Pf6N2E2_5511 0.62 -0.2 6,328,258 + Pf6N2E2_5511 0.62 -0.1 6,328,258 + Pf6N2E2_5511 0.62 +0.2 6,328,259 - Pf6N2E2_5511 0.62 -0.0 6,328,259 - Pf6N2E2_5511 0.62 +0.1 6,328,259 - Pf6N2E2_5511 0.62 +1.4 6,328,318 + Pf6N2E2_5511 0.70 -0.1 6,328,318 + Pf6N2E2_5511 0.70 -0.5 6,328,318 + Pf6N2E2_5511 0.70 +0.4 6,328,318 + Pf6N2E2_5511 0.70 -0.4 6,328,318 + Pf6N2E2_5511 0.70 -0.4 6,328,318 + Pf6N2E2_5511 0.70 -0.0 6,328,318 + Pf6N2E2_5511 0.70 +0.3 6,328,319 - Pf6N2E2_5511 0.70 -1.2 6,328,319 - Pf6N2E2_5511 0.70 +0.1 6,328,319 - Pf6N2E2_5511 0.70 +1.2 6,328,319 - Pf6N2E2_5511 0.70 -0.6 6,328,319 - Pf6N2E2_5511 0.70 -0.1 6,328,319 - Pf6N2E2_5511 0.70 -0.6 6,328,444 - Pf6N2E2_5511 0.86 -0.1 6,328,444 - Pf6N2E2_5511 0.86 -0.2 6,328,484 - -0.3 6,328,524 + -0.3 6,328,525 - +0.8 6,328,525 - +0.3 6,328,607 + -0.8 6,328,607 + -1.0 6,328,607 + +0.4 6,328,607 + +0.4 6,328,608 - -0.6 6,328,608 - +0.2 6,328,610 + +0.9 6,328,611 - +0.2 6,328,611 - -0.8 6,328,649 + -0.0 6,328,649 + -1.8 6,328,650 - -1.2
Or see this region's nucleotide sequence