Experiment: sodium iodate 0.005 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1664 and Pf6N2E2_1665 overlap by 6 nucleotides Pf6N2E2_1665 and Pf6N2E2_1666 are separated by 210 nucleotides Pf6N2E2_1666 and Pf6N2E2_1667 are separated by 113 nucleotides
Pf6N2E2_1664 - Nitrate/nitrite transporter, at 1,970,587 to 1,971,969
_1664
Pf6N2E2_1665 - hypothetical protein, at 1,971,964 to 1,972,113
_1665
Pf6N2E2_1666 - Transcriptional regulator, LysR family, at 1,972,324 to 1,973,262
_1666
Pf6N2E2_1667 - Fumarylacetoacetate hydrolase family protein, at 1,973,376 to 1,974,557
_1667
Position (kb)
1972
1973
1974 Strain fitness (log2 ratio)
-1
0
1
2 at 1971.427 kb on + strand, within Pf6N2E2_1664 at 1971.509 kb on + strand, within Pf6N2E2_1664 at 1971.510 kb on - strand, within Pf6N2E2_1664 at 1971.518 kb on + strand, within Pf6N2E2_1664 at 1971.519 kb on - strand, within Pf6N2E2_1664 at 1971.519 kb on - strand, within Pf6N2E2_1664 at 1971.578 kb on + strand, within Pf6N2E2_1664 at 1971.578 kb on + strand, within Pf6N2E2_1664 at 1971.578 kb on + strand, within Pf6N2E2_1664 at 1971.578 kb on + strand, within Pf6N2E2_1664 at 1971.579 kb on - strand, within Pf6N2E2_1664 at 1971.579 kb on - strand, within Pf6N2E2_1664 at 1971.579 kb on - strand, within Pf6N2E2_1664 at 1971.630 kb on - strand, within Pf6N2E2_1664 at 1971.770 kb on + strand, within Pf6N2E2_1664 at 1971.770 kb on + strand, within Pf6N2E2_1664 at 1971.770 kb on + strand, within Pf6N2E2_1664 at 1971.770 kb on + strand, within Pf6N2E2_1664 at 1971.771 kb on - strand, within Pf6N2E2_1664 at 1971.854 kb on + strand at 1971.854 kb on + strand at 1971.855 kb on - strand at 1971.899 kb on + strand at 1971.900 kb on - strand at 1971.974 kb on + strand at 1971.975 kb on - strand at 1971.975 kb on - strand at 1971.975 kb on - strand at 1972.041 kb on + strand, within Pf6N2E2_1665 at 1972.041 kb on + strand, within Pf6N2E2_1665 at 1972.041 kb on + strand, within Pf6N2E2_1665 at 1972.041 kb on + strand, within Pf6N2E2_1665 at 1972.042 kb on - strand, within Pf6N2E2_1665 at 1972.131 kb on + strand at 1972.131 kb on + strand at 1972.131 kb on + strand at 1972.131 kb on + strand at 1972.206 kb on + strand at 1972.239 kb on + strand at 1972.709 kb on + strand, within Pf6N2E2_1666 at 1972.710 kb on - strand, within Pf6N2E2_1666 at 1972.710 kb on - strand, within Pf6N2E2_1666 at 1972.839 kb on + strand, within Pf6N2E2_1666 at 1973.028 kb on - strand, within Pf6N2E2_1666 at 1973.035 kb on + strand, within Pf6N2E2_1666 at 1973.118 kb on + strand, within Pf6N2E2_1666 at 1973.266 kb on + strand at 1973.312 kb on - strand at 1973.342 kb on + strand at 1973.343 kb on - strand at 1973.356 kb on + strand at 1973.390 kb on + strand at 1973.390 kb on + strand at 1973.390 kb on + strand at 1973.390 kb on + strand at 1973.390 kb on + strand at 1973.391 kb on - strand at 1973.391 kb on - strand at 1973.391 kb on - strand at 1973.402 kb on + strand at 1973.403 kb on - strand at 1973.503 kb on + strand, within Pf6N2E2_1667 at 1973.504 kb on - strand, within Pf6N2E2_1667 at 1973.504 kb on - strand, within Pf6N2E2_1667 at 1973.865 kb on - strand, within Pf6N2E2_1667 at 1974.224 kb on - strand, within Pf6N2E2_1667
Per-strain Table
Position Strand Gene LocusTag Fraction sodium iodate 0.005 M remove 1,971,427 + Pf6N2E2_1664 0.61 +1.2 1,971,509 + Pf6N2E2_1664 0.67 -1.4 1,971,510 - Pf6N2E2_1664 0.67 -0.2 1,971,518 + Pf6N2E2_1664 0.67 +0.2 1,971,519 - Pf6N2E2_1664 0.67 +0.0 1,971,519 - Pf6N2E2_1664 0.67 +0.1 1,971,578 + Pf6N2E2_1664 0.72 -0.1 1,971,578 + Pf6N2E2_1664 0.72 +0.2 1,971,578 + Pf6N2E2_1664 0.72 +1.8 1,971,578 + Pf6N2E2_1664 0.72 +0.7 1,971,579 - Pf6N2E2_1664 0.72 +1.3 1,971,579 - Pf6N2E2_1664 0.72 +0.8 1,971,579 - Pf6N2E2_1664 0.72 +0.4 1,971,630 - Pf6N2E2_1664 0.75 +0.9 1,971,770 + Pf6N2E2_1664 0.86 -0.2 1,971,770 + Pf6N2E2_1664 0.86 +0.8 1,971,770 + Pf6N2E2_1664 0.86 +0.3 1,971,770 + Pf6N2E2_1664 0.86 +0.5 1,971,771 - Pf6N2E2_1664 0.86 +0.1 1,971,854 + +0.3 1,971,854 + -0.4 1,971,855 - -0.5 1,971,899 + -0.1 1,971,900 - -0.7 1,971,974 + -0.5 1,971,975 - -0.7 1,971,975 - +1.0 1,971,975 - +0.6 1,972,041 + Pf6N2E2_1665 0.51 +0.5 1,972,041 + Pf6N2E2_1665 0.51 +0.2 1,972,041 + Pf6N2E2_1665 0.51 +0.0 1,972,041 + Pf6N2E2_1665 0.51 -0.2 1,972,042 - Pf6N2E2_1665 0.52 -0.2 1,972,131 + +0.2 1,972,131 + -0.0 1,972,131 + -0.6 1,972,131 + +1.6 1,972,206 + +1.2 1,972,239 + -1.5 1,972,709 + Pf6N2E2_1666 0.41 +0.6 1,972,710 - Pf6N2E2_1666 0.41 +0.9 1,972,710 - Pf6N2E2_1666 0.41 +0.8 1,972,839 + Pf6N2E2_1666 0.55 -0.1 1,973,028 - Pf6N2E2_1666 0.75 +0.8 1,973,035 + Pf6N2E2_1666 0.76 +1.0 1,973,118 + Pf6N2E2_1666 0.85 +1.9 1,973,266 + +0.4 1,973,312 - +0.8 1,973,342 + -0.3 1,973,343 - +0.0 1,973,356 + +0.6 1,973,390 + +0.3 1,973,390 + -0.1 1,973,390 + -1.7 1,973,390 + -0.0 1,973,390 + -0.9 1,973,391 - -1.2 1,973,391 - +0.1 1,973,391 - -1.5 1,973,402 + -0.3 1,973,403 - +1.5 1,973,503 + Pf6N2E2_1667 0.11 +0.6 1,973,504 - Pf6N2E2_1667 0.11 +0.9 1,973,504 - Pf6N2E2_1667 0.11 -0.9 1,973,865 - Pf6N2E2_1667 0.41 -1.3 1,974,224 - Pf6N2E2_1667 0.72 -0.2
Or see this region's nucleotide sequence