Experiment: Minimal media pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_29130 and AO356_29135 are separated by 126 nucleotides AO356_29135 and AO356_29140 are separated by 4 nucleotides
AO356_29130: AO356_29130 - MFS transporter, at 6,771,246 to 6,772,445
_29130
AO356_29135: AO356_29135 - RND transporter, at 6,772,572 to 6,775,103
_29135
AO356_29140: AO356_29140 - BNR domain-containing protein, at 6,775,108 to 6,776,211
_29140
Position (kb)
6772
6773
6774
6775
6776 Strain fitness (log2 ratio)
-1
0
1 at 6771.755 kb on - strand, within AO356_29130 at 6771.812 kb on - strand, within AO356_29130 at 6771.932 kb on - strand, within AO356_29130 at 6772.057 kb on + strand, within AO356_29130 at 6772.057 kb on + strand, within AO356_29130 at 6772.058 kb on - strand, within AO356_29130 at 6772.060 kb on + strand, within AO356_29130 at 6772.183 kb on + strand, within AO356_29130 at 6772.341 kb on - strand at 6772.538 kb on + strand at 6772.589 kb on + strand at 6772.965 kb on - strand, within AO356_29135 at 6772.990 kb on + strand, within AO356_29135 at 6772.990 kb on + strand, within AO356_29135 at 6772.990 kb on + strand, within AO356_29135 at 6772.991 kb on - strand, within AO356_29135 at 6773.179 kb on + strand, within AO356_29135 at 6773.362 kb on + strand, within AO356_29135 at 6773.455 kb on + strand, within AO356_29135 at 6773.683 kb on + strand, within AO356_29135 at 6773.684 kb on - strand, within AO356_29135 at 6773.921 kb on - strand, within AO356_29135 at 6774.306 kb on + strand, within AO356_29135 at 6774.325 kb on + strand, within AO356_29135 at 6774.452 kb on - strand, within AO356_29135 at 6774.534 kb on + strand, within AO356_29135 at 6774.534 kb on + strand, within AO356_29135 at 6774.640 kb on + strand, within AO356_29135 at 6774.727 kb on + strand, within AO356_29135 at 6774.727 kb on + strand, within AO356_29135 at 6774.728 kb on - strand, within AO356_29135 at 6774.728 kb on - strand, within AO356_29135 at 6774.755 kb on - strand, within AO356_29135 at 6774.802 kb on + strand, within AO356_29135 at 6774.803 kb on - strand, within AO356_29135 at 6774.881 kb on - strand at 6774.881 kb on - strand at 6774.881 kb on - strand at 6774.892 kb on + strand at 6774.893 kb on - strand at 6776.068 kb on + strand, within AO356_29140
Per-strain Table
Position Strand Gene LocusTag Fraction Minimal media pH7 remove 6,771,755 - AO356_29130 0.42 +0.1 6,771,812 - AO356_29130 0.47 -1.6 6,771,932 - AO356_29130 0.57 -1.5 6,772,057 + AO356_29130 0.68 -0.2 6,772,057 + AO356_29130 0.68 +1.4 6,772,058 - AO356_29130 0.68 +1.5 6,772,060 + AO356_29130 0.68 +0.9 6,772,183 + AO356_29130 0.78 +0.4 6,772,341 - -0.8 6,772,538 + +0.1 6,772,589 + -0.5 6,772,965 - AO356_29135 0.16 -0.1 6,772,990 + AO356_29135 0.17 +0.0 6,772,990 + AO356_29135 0.17 -0.5 6,772,990 + AO356_29135 0.17 +0.2 6,772,991 - AO356_29135 0.17 -0.8 6,773,179 + AO356_29135 0.24 -0.0 6,773,362 + AO356_29135 0.31 -0.3 6,773,455 + AO356_29135 0.35 -0.6 6,773,683 + AO356_29135 0.44 -1.0 6,773,684 - AO356_29135 0.44 -0.1 6,773,921 - AO356_29135 0.53 +0.3 6,774,306 + AO356_29135 0.68 -0.3 6,774,325 + AO356_29135 0.69 +0.0 6,774,452 - AO356_29135 0.74 +0.4 6,774,534 + AO356_29135 0.77 +0.4 6,774,534 + AO356_29135 0.77 -0.1 6,774,640 + AO356_29135 0.82 +0.3 6,774,727 + AO356_29135 0.85 -0.1 6,774,727 + AO356_29135 0.85 -0.0 6,774,728 - AO356_29135 0.85 +0.4 6,774,728 - AO356_29135 0.85 -0.1 6,774,755 - AO356_29135 0.86 +0.1 6,774,802 + AO356_29135 0.88 +0.8 6,774,803 - AO356_29135 0.88 +0.1 6,774,881 - +0.4 6,774,881 - -1.0 6,774,881 - +0.4 6,774,892 + -0.1 6,774,893 - -0.2 6,776,068 + AO356_29140 0.87 -0.6
Or see this region's nucleotide sequence