Experiment: Minimal media pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_27760 and AO356_27765 overlap by 4 nucleotides AO356_27765 and AO356_27770 are separated by 70 nucleotides AO356_27770 and AO356_27775 overlap by 4 nucleotides
AO356_27760: AO356_27760 - LysR family transcriptional regulator, at 6,338,663 to 6,339,571
_27760
AO356_27765: AO356_27765 - hypothetical protein, at 6,339,568 to 6,339,918
_27765
AO356_27770: AO356_27770 - hypothetical protein, at 6,339,989 to 6,340,417
_27770
AO356_27775: AO356_27775 - UDP pyrophosphate phosphatase, at 6,340,414 to 6,341,244
_27775
Position (kb)
6339
6340
6341 Strain fitness (log2 ratio)
-2
-1
0
1 at 6339.015 kb on - strand, within AO356_27760 at 6339.396 kb on - strand, within AO356_27760 at 6339.559 kb on + strand at 6339.560 kb on - strand at 6339.567 kb on + strand at 6339.631 kb on + strand, within AO356_27765 at 6339.631 kb on + strand, within AO356_27765 at 6339.632 kb on - strand, within AO356_27765 at 6339.885 kb on - strand at 6339.916 kb on + strand at 6339.917 kb on - strand at 6339.991 kb on - strand at 6340.056 kb on - strand, within AO356_27770 at 6340.056 kb on - strand, within AO356_27770 at 6340.221 kb on + strand, within AO356_27770 at 6340.222 kb on - strand, within AO356_27770 at 6340.508 kb on + strand, within AO356_27775 at 6340.626 kb on - strand, within AO356_27775 at 6340.640 kb on + strand, within AO356_27775 at 6340.640 kb on + strand, within AO356_27775 at 6340.701 kb on + strand, within AO356_27775 at 6340.922 kb on + strand, within AO356_27775 at 6340.922 kb on + strand, within AO356_27775 at 6340.923 kb on - strand, within AO356_27775 at 6341.204 kb on - strand at 6341.204 kb on - strand at 6341.281 kb on - strand at 6341.281 kb on - strand at 6341.281 kb on - strand at 6341.281 kb on - strand at 6341.305 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Minimal media pH7 remove 6,339,015 - AO356_27760 0.39 +0.9 6,339,396 - AO356_27760 0.81 -0.0 6,339,559 + +0.2 6,339,560 - +0.9 6,339,567 + +1.5 6,339,631 + AO356_27765 0.18 +0.6 6,339,631 + AO356_27765 0.18 -0.3 6,339,632 - AO356_27765 0.18 -0.0 6,339,885 - +0.2 6,339,916 + +0.5 6,339,917 - +0.1 6,339,991 - +0.2 6,340,056 - AO356_27770 0.16 -0.7 6,340,056 - AO356_27770 0.16 -1.5 6,340,221 + AO356_27770 0.54 +0.7 6,340,222 - AO356_27770 0.54 -0.1 6,340,508 + AO356_27775 0.11 +1.3 6,340,626 - AO356_27775 0.26 +1.0 6,340,640 + AO356_27775 0.27 +0.1 6,340,640 + AO356_27775 0.27 +0.4 6,340,701 + AO356_27775 0.35 +0.7 6,340,922 + AO356_27775 0.61 +1.2 6,340,922 + AO356_27775 0.61 +0.6 6,340,923 - AO356_27775 0.61 -0.3 6,341,204 - +0.5 6,341,204 - -2.1 6,341,281 - -1.0 6,341,281 - -1.6 6,341,281 - +0.1 6,341,281 - +0.6 6,341,305 + -0.9
Or see this region's nucleotide sequence