Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27770

Experiment: Minimal media pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_27760 and AO356_27765 overlap by 4 nucleotidesAO356_27765 and AO356_27770 are separated by 70 nucleotidesAO356_27770 and AO356_27775 overlap by 4 nucleotides AO356_27760: AO356_27760 - LysR family transcriptional regulator, at 6,338,663 to 6,339,571 _27760 AO356_27765: AO356_27765 - hypothetical protein, at 6,339,568 to 6,339,918 _27765 AO356_27770: AO356_27770 - hypothetical protein, at 6,339,989 to 6,340,417 _27770 AO356_27775: AO356_27775 - UDP pyrophosphate phosphatase, at 6,340,414 to 6,341,244 _27775 Position (kb) 6339 6340 6341Strain fitness (log2 ratio) -2 -1 0 1at 6339.015 kb on - strand, within AO356_27760at 6339.396 kb on - strand, within AO356_27760at 6339.559 kb on + strandat 6339.560 kb on - strandat 6339.567 kb on + strandat 6339.631 kb on + strand, within AO356_27765at 6339.631 kb on + strand, within AO356_27765at 6339.632 kb on - strand, within AO356_27765at 6339.885 kb on - strandat 6339.916 kb on + strandat 6339.917 kb on - strandat 6339.991 kb on - strandat 6340.056 kb on - strand, within AO356_27770at 6340.056 kb on - strand, within AO356_27770at 6340.221 kb on + strand, within AO356_27770at 6340.222 kb on - strand, within AO356_27770at 6340.508 kb on + strand, within AO356_27775at 6340.626 kb on - strand, within AO356_27775at 6340.640 kb on + strand, within AO356_27775at 6340.640 kb on + strand, within AO356_27775at 6340.701 kb on + strand, within AO356_27775at 6340.922 kb on + strand, within AO356_27775at 6340.922 kb on + strand, within AO356_27775at 6340.923 kb on - strand, within AO356_27775at 6341.204 kb on - strandat 6341.204 kb on - strandat 6341.281 kb on - strandat 6341.281 kb on - strandat 6341.281 kb on - strandat 6341.281 kb on - strandat 6341.305 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Minimal media pH7
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6,339,015 - AO356_27760 0.39 +0.9
6,339,396 - AO356_27760 0.81 -0.0
6,339,559 + +0.2
6,339,560 - +0.9
6,339,567 + +1.5
6,339,631 + AO356_27765 0.18 +0.6
6,339,631 + AO356_27765 0.18 -0.3
6,339,632 - AO356_27765 0.18 -0.0
6,339,885 - +0.2
6,339,916 + +0.5
6,339,917 - +0.1
6,339,991 - +0.2
6,340,056 - AO356_27770 0.16 -0.7
6,340,056 - AO356_27770 0.16 -1.5
6,340,221 + AO356_27770 0.54 +0.7
6,340,222 - AO356_27770 0.54 -0.1
6,340,508 + AO356_27775 0.11 +1.3
6,340,626 - AO356_27775 0.26 +1.0
6,340,640 + AO356_27775 0.27 +0.1
6,340,640 + AO356_27775 0.27 +0.4
6,340,701 + AO356_27775 0.35 +0.7
6,340,922 + AO356_27775 0.61 +1.2
6,340,922 + AO356_27775 0.61 +0.6
6,340,923 - AO356_27775 0.61 -0.3
6,341,204 - +0.5
6,341,204 - -2.1
6,341,281 - -1.0
6,341,281 - -1.6
6,341,281 - +0.1
6,341,281 - +0.6
6,341,305 + -0.9

Or see this region's nucleotide sequence