Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_19775

Experiment: Minimal media pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_19770 and AO356_19775 are separated by 11 nucleotidesAO356_19775 and AO356_19780 are separated by 248 nucleotides AO356_19770: AO356_19770 - 3-oxoacyl-ACP synthase, at 4,433,364 to 4,434,584 _19770 AO356_19775: AO356_19775 - 3-hydroxydecanoyl-ACP dehydratase, at 4,434,596 to 4,435,111 _19775 AO356_19780: AO356_19780 - histidine kinase, at 4,435,360 to 4,437,261 _19780 Position (kb) 4434 4435 4436Strain fitness (log2 ratio) -1 0 1at 4435.126 kb on - strandat 4435.196 kb on - strandat 4435.249 kb on - strandat 4435.361 kb on + strandat 4435.361 kb on + strandat 4435.361 kb on + strandat 4435.362 kb on - strandat 4435.362 kb on - strandat 4435.362 kb on - strandat 4435.362 kb on - strandat 4435.362 kb on - strandat 4435.422 kb on - strandat 4435.422 kb on - strandat 4435.609 kb on + strand, within AO356_19780at 4435.610 kb on - strand, within AO356_19780at 4435.907 kb on + strand, within AO356_19780at 4435.977 kb on + strand, within AO356_19780at 4435.977 kb on + strand, within AO356_19780at 4435.978 kb on - strand, within AO356_19780at 4435.978 kb on - strand, within AO356_19780

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Per-strain Table

Position Strand Gene LocusTag Fraction Minimal media pH7
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4,435,126 - +1.0
4,435,196 - +0.6
4,435,249 - +0.1
4,435,361 + +0.8
4,435,361 + +0.7
4,435,361 + -0.2
4,435,362 - +0.5
4,435,362 - -0.6
4,435,362 - -0.1
4,435,362 - -0.4
4,435,362 - +0.2
4,435,422 - +0.5
4,435,422 - +0.3
4,435,609 + AO356_19780 0.13 +0.8
4,435,610 - AO356_19780 0.13 +0.6
4,435,907 + AO356_19780 0.29 +0.5
4,435,977 + AO356_19780 0.32 +0.8
4,435,977 + AO356_19780 0.32 +0.1
4,435,978 - AO356_19780 0.32 +0.7
4,435,978 - AO356_19780 0.32 +1.4

Or see this region's nucleotide sequence