Experiment: Minimal media pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_14400 and AO356_14405 are separated by 202 nucleotides AO356_14405 and AO356_14410 are separated by 78 nucleotides AO356_14410 and AO356_14415 overlap by 4 nucleotides
AO356_14400: AO356_14400 - polyamine ABC transporter permease, at 3,276,165 to 3,276,989
_14400
AO356_14405: AO356_14405 - alcohol dehydrogenase, at 3,277,192 to 3,278,340
_14405
AO356_14410: AO356_14410 - ribulose phosphate epimerase, at 3,278,419 to 3,279,093
_14410
AO356_14415: AO356_14415 - phosphoglycolate phosphatase, at 3,279,090 to 3,279,908
_14415
Position (kb)
3277
3278
3279 Strain fitness (log2 ratio)
-2
-1
0
1 at 3276.207 kb on + strand at 3276.207 kb on + strand at 3276.208 kb on - strand at 3276.307 kb on - strand, within AO356_14400 at 3276.336 kb on + strand, within AO356_14400 at 3276.543 kb on + strand, within AO356_14400 at 3276.543 kb on + strand, within AO356_14400 at 3276.543 kb on + strand, within AO356_14400 at 3276.543 kb on + strand, within AO356_14400 at 3276.543 kb on + strand, within AO356_14400 at 3276.544 kb on - strand, within AO356_14400 at 3276.544 kb on - strand, within AO356_14400 at 3276.544 kb on - strand, within AO356_14400 at 3276.544 kb on - strand, within AO356_14400 at 3276.544 kb on - strand, within AO356_14400 at 3276.544 kb on - strand, within AO356_14400 at 3276.544 kb on - strand, within AO356_14400 at 3276.544 kb on - strand, within AO356_14400 at 3277.038 kb on - strand at 3277.117 kb on + strand at 3277.117 kb on + strand at 3277.151 kb on + strand at 3277.152 kb on - strand at 3277.152 kb on - strand at 3277.152 kb on - strand at 3277.177 kb on + strand at 3277.177 kb on + strand at 3277.177 kb on + strand at 3277.178 kb on - strand at 3277.221 kb on + strand at 3277.221 kb on + strand at 3277.369 kb on + strand, within AO356_14405 at 3277.370 kb on - strand, within AO356_14405 at 3277.513 kb on + strand, within AO356_14405 at 3277.513 kb on + strand, within AO356_14405 at 3277.514 kb on - strand, within AO356_14405 at 3277.514 kb on - strand, within AO356_14405 at 3277.542 kb on + strand, within AO356_14405 at 3277.542 kb on + strand, within AO356_14405 at 3277.542 kb on + strand, within AO356_14405 at 3277.542 kb on + strand, within AO356_14405 at 3277.542 kb on + strand, within AO356_14405 at 3277.543 kb on - strand, within AO356_14405 at 3277.543 kb on - strand, within AO356_14405 at 3277.543 kb on - strand, within AO356_14405 at 3277.543 kb on - strand, within AO356_14405 at 3277.543 kb on - strand, within AO356_14405 at 3277.792 kb on + strand, within AO356_14405 at 3277.792 kb on + strand, within AO356_14405 at 3277.792 kb on + strand, within AO356_14405 at 3277.792 kb on + strand, within AO356_14405 at 3277.793 kb on - strand, within AO356_14405 at 3277.876 kb on + strand, within AO356_14405 at 3277.877 kb on - strand, within AO356_14405 at 3277.984 kb on + strand, within AO356_14405 at 3277.991 kb on + strand, within AO356_14405 at 3277.991 kb on + strand, within AO356_14405 at 3277.991 kb on + strand, within AO356_14405 at 3278.044 kb on + strand, within AO356_14405 at 3278.044 kb on + strand, within AO356_14405 at 3278.044 kb on + strand, within AO356_14405 at 3278.208 kb on + strand, within AO356_14405 at 3278.209 kb on - strand, within AO356_14405 at 3278.375 kb on + strand at 3278.375 kb on + strand at 3278.375 kb on + strand at 3278.375 kb on + strand at 3278.375 kb on + strand at 3278.375 kb on + strand at 3278.375 kb on + strand at 3278.375 kb on + strand at 3278.376 kb on - strand at 3278.376 kb on - strand at 3278.377 kb on + strand at 3278.377 kb on + strand at 3278.377 kb on + strand at 3278.377 kb on + strand at 3278.377 kb on + strand at 3278.377 kb on + strand at 3278.377 kb on + strand at 3278.377 kb on + strand at 3278.377 kb on + strand at 3278.378 kb on - strand at 3278.378 kb on - strand at 3278.378 kb on - strand at 3278.378 kb on - strand at 3278.378 kb on - strand at 3278.378 kb on - strand at 3278.378 kb on - strand at 3278.378 kb on - strand at 3278.378 kb on - strand at 3278.378 kb on - strand at 3279.200 kb on + strand, within AO356_14415 at 3279.200 kb on + strand, within AO356_14415 at 3279.200 kb on + strand, within AO356_14415 at 3279.200 kb on + strand, within AO356_14415 at 3279.200 kb on + strand, within AO356_14415 at 3279.200 kb on + strand, within AO356_14415 at 3279.200 kb on + strand, within AO356_14415 at 3279.201 kb on - strand, within AO356_14415
Per-strain Table
Position Strand Gene LocusTag Fraction Minimal media pH7 remove 3,276,207 + +0.4 3,276,207 + +0.7 3,276,208 - +0.5 3,276,307 - AO356_14400 0.17 -1.1 3,276,336 + AO356_14400 0.21 -0.0 3,276,543 + AO356_14400 0.46 +1.0 3,276,543 + AO356_14400 0.46 -0.5 3,276,543 + AO356_14400 0.46 +0.5 3,276,543 + AO356_14400 0.46 -0.7 3,276,543 + AO356_14400 0.46 +0.3 3,276,544 - AO356_14400 0.46 -0.2 3,276,544 - AO356_14400 0.46 -0.2 3,276,544 - AO356_14400 0.46 +0.3 3,276,544 - AO356_14400 0.46 -1.3 3,276,544 - AO356_14400 0.46 +0.3 3,276,544 - AO356_14400 0.46 +0.1 3,276,544 - AO356_14400 0.46 -1.5 3,276,544 - AO356_14400 0.46 +0.2 3,277,038 - -0.4 3,277,117 + +0.3 3,277,117 + -0.2 3,277,151 + -0.4 3,277,152 - -0.3 3,277,152 - +0.2 3,277,152 - +0.5 3,277,177 + +0.9 3,277,177 + +0.3 3,277,177 + +0.5 3,277,178 - -2.6 3,277,221 + +0.3 3,277,221 + +0.8 3,277,369 + AO356_14405 0.15 +0.4 3,277,370 - AO356_14405 0.15 +0.4 3,277,513 + AO356_14405 0.28 +0.0 3,277,513 + AO356_14405 0.28 -0.2 3,277,514 - AO356_14405 0.28 +0.3 3,277,514 - AO356_14405 0.28 +0.8 3,277,542 + AO356_14405 0.30 -0.1 3,277,542 + AO356_14405 0.30 -0.3 3,277,542 + AO356_14405 0.30 +1.1 3,277,542 + AO356_14405 0.30 +0.7 3,277,542 + AO356_14405 0.30 +0.6 3,277,543 - AO356_14405 0.31 +0.9 3,277,543 - AO356_14405 0.31 -0.2 3,277,543 - AO356_14405 0.31 -0.4 3,277,543 - AO356_14405 0.31 +0.6 3,277,543 - AO356_14405 0.31 -0.7 3,277,792 + AO356_14405 0.52 -1.0 3,277,792 + AO356_14405 0.52 -0.3 3,277,792 + AO356_14405 0.52 +1.4 3,277,792 + AO356_14405 0.52 +1.1 3,277,793 - AO356_14405 0.52 +1.0 3,277,876 + AO356_14405 0.60 +0.4 3,277,877 - AO356_14405 0.60 +0.2 3,277,984 + AO356_14405 0.69 -1.0 3,277,991 + AO356_14405 0.70 +0.3 3,277,991 + AO356_14405 0.70 -0.2 3,277,991 + AO356_14405 0.70 -0.4 3,278,044 + AO356_14405 0.74 +0.5 3,278,044 + AO356_14405 0.74 -0.3 3,278,044 + AO356_14405 0.74 -0.1 3,278,208 + AO356_14405 0.88 -0.9 3,278,209 - AO356_14405 0.89 -0.6 3,278,375 + +0.2 3,278,375 + -0.7 3,278,375 + -1.0 3,278,375 + +0.1 3,278,375 + -0.2 3,278,375 + +0.7 3,278,375 + +0.7 3,278,375 + -0.1 3,278,376 - +0.6 3,278,376 - -1.1 3,278,377 + +0.6 3,278,377 + +0.6 3,278,377 + -0.2 3,278,377 + +0.8 3,278,377 + +0.5 3,278,377 + +0.1 3,278,377 + +0.1 3,278,377 + -0.3 3,278,377 + -0.8 3,278,378 - +0.2 3,278,378 - +0.0 3,278,378 - +0.8 3,278,378 - +0.2 3,278,378 - +0.2 3,278,378 - -1.7 3,278,378 - -0.1 3,278,378 - -1.0 3,278,378 - +1.0 3,278,378 - +0.1 3,279,200 + AO356_14415 0.13 +0.3 3,279,200 + AO356_14415 0.13 +0.0 3,279,200 + AO356_14415 0.13 -0.3 3,279,200 + AO356_14415 0.13 -0.3 3,279,200 + AO356_14415 0.13 +0.3 3,279,200 + AO356_14415 0.13 -0.6 3,279,200 + AO356_14415 0.13 +0.1 3,279,201 - AO356_14415 0.14 +0.2
Or see this region's nucleotide sequence