Experiment: Minimal media pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_11310 and AO356_11315 are separated by 13 nucleotides AO356_11315 and AO356_11320 are separated by 112 nucleotides
AO356_11310: AO356_11310 - coproporphyrinogen III oxidase, at 2,563,719 to 2,564,633
_11310
AO356_11315: AO356_11315 - shikimate dehydrogenase, at 2,564,647 to 2,565,468
_11315
AO356_11320: AO356_11320 - SulP family inorganic anion transporter, at 2,565,581 to 2,567,149
_11320
Position (kb)
2564
2565
2566 Strain fitness (log2 ratio)
-1
0
1 at 2563.650 kb on + strand at 2563.651 kb on - strand at 2563.681 kb on + strand at 2563.683 kb on + strand at 2563.683 kb on + strand at 2563.683 kb on + strand at 2563.683 kb on + strand at 2563.683 kb on + strand at 2563.697 kb on + strand at 2563.697 kb on + strand at 2563.697 kb on + strand at 2564.641 kb on + strand at 2564.656 kb on + strand at 2564.656 kb on + strand at 2564.656 kb on + strand at 2564.656 kb on + strand at 2564.744 kb on - strand, within AO356_11315 at 2564.901 kb on + strand, within AO356_11315 at 2564.902 kb on - strand, within AO356_11315 at 2565.292 kb on + strand, within AO356_11315 at 2565.293 kb on - strand, within AO356_11315 at 2565.467 kb on - strand at 2565.467 kb on - strand at 2565.467 kb on - strand at 2565.478 kb on - strand at 2565.478 kb on - strand at 2565.478 kb on - strand at 2565.478 kb on - strand at 2565.478 kb on - strand at 2565.478 kb on - strand at 2565.564 kb on + strand at 2565.564 kb on + strand at 2565.564 kb on + strand at 2565.564 kb on + strand at 2565.565 kb on - strand at 2565.565 kb on - strand at 2565.673 kb on + strand at 2565.729 kb on + strand at 2565.729 kb on + strand at 2565.730 kb on - strand at 2565.794 kb on + strand, within AO356_11320 at 2565.794 kb on + strand, within AO356_11320 at 2565.794 kb on + strand, within AO356_11320 at 2565.795 kb on - strand, within AO356_11320 at 2565.795 kb on - strand, within AO356_11320 at 2565.795 kb on - strand, within AO356_11320 at 2565.795 kb on - strand, within AO356_11320 at 2565.795 kb on - strand, within AO356_11320 at 2565.795 kb on - strand, within AO356_11320 at 2565.795 kb on - strand, within AO356_11320 at 2565.795 kb on - strand, within AO356_11320 at 2565.795 kb on - strand, within AO356_11320 at 2565.795 kb on - strand, within AO356_11320 at 2565.804 kb on + strand, within AO356_11320 at 2565.805 kb on - strand, within AO356_11320 at 2565.805 kb on - strand, within AO356_11320 at 2565.903 kb on + strand, within AO356_11320 at 2565.904 kb on - strand, within AO356_11320 at 2565.923 kb on + strand, within AO356_11320 at 2565.923 kb on + strand, within AO356_11320 at 2565.933 kb on + strand, within AO356_11320 at 2565.933 kb on + strand, within AO356_11320 at 2565.933 kb on + strand, within AO356_11320 at 2565.933 kb on + strand, within AO356_11320 at 2565.934 kb on - strand, within AO356_11320 at 2565.934 kb on - strand, within AO356_11320 at 2565.934 kb on - strand, within AO356_11320 at 2565.934 kb on - strand, within AO356_11320 at 2565.934 kb on - strand, within AO356_11320 at 2565.934 kb on - strand, within AO356_11320 at 2566.014 kb on + strand, within AO356_11320 at 2566.185 kb on + strand, within AO356_11320 at 2566.185 kb on + strand, within AO356_11320 at 2566.185 kb on + strand, within AO356_11320 at 2566.185 kb on + strand, within AO356_11320 at 2566.186 kb on - strand, within AO356_11320 at 2566.186 kb on - strand, within AO356_11320 at 2566.186 kb on - strand, within AO356_11320 at 2566.186 kb on - strand, within AO356_11320 at 2566.186 kb on - strand, within AO356_11320 at 2566.186 kb on - strand, within AO356_11320 at 2566.186 kb on - strand, within AO356_11320 at 2566.307 kb on + strand, within AO356_11320 at 2566.307 kb on + strand, within AO356_11320 at 2566.308 kb on - strand, within AO356_11320 at 2566.308 kb on - strand, within AO356_11320 at 2566.308 kb on - strand, within AO356_11320 at 2566.308 kb on - strand, within AO356_11320 at 2566.308 kb on - strand, within AO356_11320 at 2566.308 kb on - strand, within AO356_11320
Per-strain Table
Position Strand Gene LocusTag Fraction Minimal media pH7 remove 2,563,650 + +0.6 2,563,651 - +0.5 2,563,681 + +0.3 2,563,683 + +0.2 2,563,683 + -0.0 2,563,683 + +0.7 2,563,683 + -0.1 2,563,683 + +0.3 2,563,697 + -0.4 2,563,697 + +0.3 2,563,697 + +0.6 2,564,641 + -0.1 2,564,656 + +0.2 2,564,656 + -1.6 2,564,656 + -1.5 2,564,656 + -0.6 2,564,744 - AO356_11315 0.12 -1.1 2,564,901 + AO356_11315 0.31 -1.0 2,564,902 - AO356_11315 0.31 -1.5 2,565,292 + AO356_11315 0.78 +0.1 2,565,293 - AO356_11315 0.79 -0.6 2,565,467 - +0.8 2,565,467 - -0.0 2,565,467 - -0.1 2,565,478 - -0.7 2,565,478 - +0.3 2,565,478 - -0.7 2,565,478 - -0.1 2,565,478 - -1.3 2,565,478 - +0.2 2,565,564 + +0.2 2,565,564 + -0.4 2,565,564 + +1.0 2,565,564 + -0.6 2,565,565 - -0.3 2,565,565 - -0.4 2,565,673 + +0.2 2,565,729 + +0.2 2,565,729 + -0.2 2,565,730 - +0.2 2,565,794 + AO356_11320 0.14 +0.2 2,565,794 + AO356_11320 0.14 +1.2 2,565,794 + AO356_11320 0.14 -0.8 2,565,795 - AO356_11320 0.14 +0.8 2,565,795 - AO356_11320 0.14 -0.1 2,565,795 - AO356_11320 0.14 -0.2 2,565,795 - AO356_11320 0.14 -0.0 2,565,795 - AO356_11320 0.14 -0.9 2,565,795 - AO356_11320 0.14 +0.4 2,565,795 - AO356_11320 0.14 +0.2 2,565,795 - AO356_11320 0.14 -1.0 2,565,795 - AO356_11320 0.14 -1.1 2,565,795 - AO356_11320 0.14 -0.2 2,565,804 + AO356_11320 0.14 +0.3 2,565,805 - AO356_11320 0.14 -0.2 2,565,805 - AO356_11320 0.14 +0.8 2,565,903 + AO356_11320 0.21 -0.2 2,565,904 - AO356_11320 0.21 +0.2 2,565,923 + AO356_11320 0.22 +0.7 2,565,923 + AO356_11320 0.22 -0.2 2,565,933 + AO356_11320 0.22 +0.4 2,565,933 + AO356_11320 0.22 +0.3 2,565,933 + AO356_11320 0.22 -0.3 2,565,933 + AO356_11320 0.22 +0.1 2,565,934 - AO356_11320 0.22 +0.0 2,565,934 - AO356_11320 0.22 +0.1 2,565,934 - AO356_11320 0.22 +0.3 2,565,934 - AO356_11320 0.22 -0.3 2,565,934 - AO356_11320 0.22 +0.8 2,565,934 - AO356_11320 0.22 -0.1 2,566,014 + AO356_11320 0.28 +1.3 2,566,185 + AO356_11320 0.38 -0.8 2,566,185 + AO356_11320 0.38 -0.2 2,566,185 + AO356_11320 0.38 +0.6 2,566,185 + AO356_11320 0.38 -0.2 2,566,186 - AO356_11320 0.39 +0.8 2,566,186 - AO356_11320 0.39 +0.7 2,566,186 - AO356_11320 0.39 -0.7 2,566,186 - AO356_11320 0.39 +0.7 2,566,186 - AO356_11320 0.39 -0.7 2,566,186 - AO356_11320 0.39 -0.8 2,566,186 - AO356_11320 0.39 -0.1 2,566,307 + AO356_11320 0.46 +0.8 2,566,307 + AO356_11320 0.46 -0.6 2,566,308 - AO356_11320 0.46 +0.3 2,566,308 - AO356_11320 0.46 -1.7 2,566,308 - AO356_11320 0.46 -0.9 2,566,308 - AO356_11320 0.46 +0.7 2,566,308 - AO356_11320 0.46 -0.5 2,566,308 - AO356_11320 0.46 +1.1
Or see this region's nucleotide sequence