Experiment: Minimal media pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_08140 and AO356_08145 are separated by 3 nucleotides AO356_08145 and AO356_08150 overlap by 4 nucleotides
AO356_08140: AO356_08140 - MATE family efflux transporter, at 1,820,260 to 1,821,609
_08140
AO356_08145: AO356_08145 - hypothetical protein, at 1,821,613 to 1,822,407
_08145
AO356_08150: AO356_08150 - type VI secretion protein, at 1,822,404 to 1,823,711
_08150
Position (kb)
1821
1822
1823 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1820.714 kb on - strand, within AO356_08140 at 1820.714 kb on - strand, within AO356_08140 at 1821.315 kb on - strand, within AO356_08140 at 1821.328 kb on + strand, within AO356_08140 at 1821.328 kb on + strand, within AO356_08140 at 1821.334 kb on + strand, within AO356_08140 at 1821.335 kb on - strand, within AO356_08140 at 1821.335 kb on - strand, within AO356_08140 at 1821.343 kb on + strand, within AO356_08140 at 1821.379 kb on + strand, within AO356_08140 at 1821.380 kb on - strand, within AO356_08140 at 1821.380 kb on - strand, within AO356_08140 at 1821.608 kb on - strand at 1821.800 kb on + strand, within AO356_08145 at 1822.052 kb on + strand, within AO356_08145 at 1822.053 kb on - strand, within AO356_08145 at 1822.053 kb on - strand, within AO356_08145 at 1822.073 kb on + strand, within AO356_08145 at 1822.073 kb on + strand, within AO356_08145 at 1822.074 kb on - strand, within AO356_08145 at 1822.357 kb on + strand at 1822.357 kb on + strand at 1822.771 kb on + strand, within AO356_08150 at 1822.771 kb on + strand, within AO356_08150 at 1822.772 kb on - strand, within AO356_08150 at 1822.933 kb on + strand, within AO356_08150 at 1822.933 kb on + strand, within AO356_08150 at 1822.934 kb on - strand, within AO356_08150 at 1822.934 kb on - strand, within AO356_08150 at 1822.934 kb on - strand, within AO356_08150 at 1822.934 kb on - strand, within AO356_08150 at 1823.135 kb on - strand, within AO356_08150
Per-strain Table
Position Strand Gene LocusTag Fraction Minimal media pH7 remove 1,820,714 - AO356_08140 0.34 -0.1 1,820,714 - AO356_08140 0.34 +0.5 1,821,315 - AO356_08140 0.78 -1.1 1,821,328 + AO356_08140 0.79 +0.5 1,821,328 + AO356_08140 0.79 -0.8 1,821,334 + AO356_08140 0.80 +0.3 1,821,335 - AO356_08140 0.80 -0.3 1,821,335 - AO356_08140 0.80 -1.4 1,821,343 + AO356_08140 0.80 -0.1 1,821,379 + AO356_08140 0.83 -0.1 1,821,380 - AO356_08140 0.83 +0.4 1,821,380 - AO356_08140 0.83 +0.1 1,821,608 - +0.4 1,821,800 + AO356_08145 0.24 -0.4 1,822,052 + AO356_08145 0.55 +0.4 1,822,053 - AO356_08145 0.55 +0.7 1,822,053 - AO356_08145 0.55 +0.2 1,822,073 + AO356_08145 0.58 +0.5 1,822,073 + AO356_08145 0.58 +0.1 1,822,074 - AO356_08145 0.58 -0.1 1,822,357 + +0.6 1,822,357 + +0.2 1,822,771 + AO356_08150 0.28 -1.2 1,822,771 + AO356_08150 0.28 +0.2 1,822,772 - AO356_08150 0.28 +0.3 1,822,933 + AO356_08150 0.40 +0.5 1,822,933 + AO356_08150 0.40 -2.9 1,822,934 - AO356_08150 0.41 +0.7 1,822,934 - AO356_08150 0.41 +0.3 1,822,934 - AO356_08150 0.41 -0.2 1,822,934 - AO356_08150 0.41 -0.2 1,823,135 - AO356_08150 0.56 +0.5
Or see this region's nucleotide sequence