Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_07360

Experiment: Minimal media pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_07355 and AO356_07360 overlap by 4 nucleotidesAO356_07360 and AO356_07365 are separated by 64 nucleotides AO356_07355: AO356_07355 - hypothetical protein, at 1,630,740 to 1,631,576 _07355 AO356_07360: AO356_07360 - N-acetyl-anhydromuranmyl-L-alanine amidase, at 1,631,573 to 1,632,133 _07360 AO356_07365: AO356_07365 - thymidine phosphorylase, at 1,632,198 to 1,634,411 _07365 Position (kb) 1631 1632 1633Strain fitness (log2 ratio) -2 -1 0 1at 1630.586 kb on + strandat 1630.586 kb on + strandat 1630.587 kb on - strandat 1630.587 kb on - strandat 1630.587 kb on - strandat 1630.587 kb on - strandat 1630.592 kb on + strandat 1630.593 kb on - strandat 1630.774 kb on + strandat 1630.775 kb on - strandat 1630.823 kb on + strandat 1630.823 kb on + strandat 1630.823 kb on + strandat 1630.823 kb on + strandat 1630.823 kb on + strandat 1630.824 kb on - strand, within AO356_07355at 1630.824 kb on - strand, within AO356_07355at 1630.824 kb on - strand, within AO356_07355at 1630.824 kb on - strand, within AO356_07355at 1631.119 kb on + strand, within AO356_07355at 1631.149 kb on + strand, within AO356_07355at 1631.320 kb on + strand, within AO356_07355at 1631.321 kb on - strand, within AO356_07355at 1631.362 kb on + strand, within AO356_07355at 1631.363 kb on - strand, within AO356_07355at 1631.363 kb on - strand, within AO356_07355at 1631.363 kb on - strand, within AO356_07355at 1631.363 kb on - strand, within AO356_07355at 1631.677 kb on + strand, within AO356_07360at 1631.677 kb on + strand, within AO356_07360at 1631.677 kb on + strand, within AO356_07360at 1631.677 kb on + strand, within AO356_07360at 1631.677 kb on + strand, within AO356_07360at 1631.678 kb on - strand, within AO356_07360at 1631.678 kb on - strand, within AO356_07360at 1631.678 kb on - strand, within AO356_07360at 1631.742 kb on + strand, within AO356_07360at 1631.742 kb on + strand, within AO356_07360at 1631.742 kb on + strand, within AO356_07360at 1631.742 kb on + strand, within AO356_07360at 1631.743 kb on - strand, within AO356_07360at 1631.743 kb on - strand, within AO356_07360at 1631.743 kb on - strand, within AO356_07360at 1631.943 kb on + strand, within AO356_07360at 1631.944 kb on - strand, within AO356_07360at 1632.134 kb on - strandat 1632.134 kb on - strandat 1632.134 kb on - strandat 1632.170 kb on + strandat 1632.170 kb on + strandat 1632.170 kb on + strandat 1632.170 kb on + strandat 1632.171 kb on - strandat 1632.171 kb on - strandat 1632.364 kb on + strandat 1632.364 kb on + strandat 1632.364 kb on + strandat 1632.365 kb on - strandat 1632.410 kb on + strandat 1632.411 kb on - strandat 1632.411 kb on - strandat 1632.829 kb on + strand, within AO356_07365at 1632.829 kb on + strand, within AO356_07365at 1632.829 kb on + strand, within AO356_07365at 1632.829 kb on + strand, within AO356_07365at 1632.829 kb on + strand, within AO356_07365at 1632.829 kb on + strand, within AO356_07365at 1632.829 kb on + strand, within AO356_07365at 1632.830 kb on - strand, within AO356_07365at 1632.999 kb on - strand, within AO356_07365

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Per-strain Table

Position Strand Gene LocusTag Fraction Minimal media pH7
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1,630,586 + -0.3
1,630,586 + -1.3
1,630,587 - -0.3
1,630,587 - +0.5
1,630,587 - +0.5
1,630,587 - -0.1
1,630,592 + +0.6
1,630,593 - +0.3
1,630,774 + +1.1
1,630,775 - -0.4
1,630,823 + -0.9
1,630,823 + +0.3
1,630,823 + +1.3
1,630,823 + +0.5
1,630,823 + +0.3
1,630,824 - AO356_07355 0.10 +0.1
1,630,824 - AO356_07355 0.10 +0.5
1,630,824 - AO356_07355 0.10 +0.5
1,630,824 - AO356_07355 0.10 -0.4
1,631,119 + AO356_07355 0.45 +0.7
1,631,149 + AO356_07355 0.49 +0.8
1,631,320 + AO356_07355 0.69 -0.4
1,631,321 - AO356_07355 0.69 +0.3
1,631,362 + AO356_07355 0.74 +0.7
1,631,363 - AO356_07355 0.74 +0.1
1,631,363 - AO356_07355 0.74 +0.3
1,631,363 - AO356_07355 0.74 -1.7
1,631,363 - AO356_07355 0.74 +0.3
1,631,677 + AO356_07360 0.19 -0.3
1,631,677 + AO356_07360 0.19 +0.6
1,631,677 + AO356_07360 0.19 -0.0
1,631,677 + AO356_07360 0.19 +0.5
1,631,677 + AO356_07360 0.19 +0.7
1,631,678 - AO356_07360 0.19 +0.5
1,631,678 - AO356_07360 0.19 -0.3
1,631,678 - AO356_07360 0.19 -0.6
1,631,742 + AO356_07360 0.30 +0.3
1,631,742 + AO356_07360 0.30 +0.5
1,631,742 + AO356_07360 0.30 +0.2
1,631,742 + AO356_07360 0.30 -0.1
1,631,743 - AO356_07360 0.30 -2.2
1,631,743 - AO356_07360 0.30 -0.1
1,631,743 - AO356_07360 0.30 -0.7
1,631,943 + AO356_07360 0.66 +0.4
1,631,944 - AO356_07360 0.66 -0.7
1,632,134 - +0.0
1,632,134 - +0.9
1,632,134 - +0.6
1,632,170 + -0.2
1,632,170 + +0.9
1,632,170 + +0.8
1,632,170 + +0.1
1,632,171 - -0.9
1,632,171 - +1.2
1,632,364 + +0.6
1,632,364 + +0.6
1,632,364 + +0.1
1,632,365 - -0.2
1,632,410 + -0.0
1,632,411 - -0.0
1,632,411 - +0.6
1,632,829 + AO356_07365 0.29 -0.8
1,632,829 + AO356_07365 0.29 +0.6
1,632,829 + AO356_07365 0.29 -0.5
1,632,829 + AO356_07365 0.29 -0.0
1,632,829 + AO356_07365 0.29 +0.1
1,632,829 + AO356_07365 0.29 -0.0
1,632,829 + AO356_07365 0.29 +0.7
1,632,830 - AO356_07365 0.29 +0.3
1,632,999 - AO356_07365 0.36 +0.2

Or see this region's nucleotide sequence