Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_19930

Experiment: Minimal media pH6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_19920 and AO356_19925 are separated by 198 nucleotidesAO356_19925 and AO356_19930 are separated by 129 nucleotidesAO356_19930 and AO356_19935 are separated by 300 nucleotidesAO356_19935 and AO356_19940 are separated by 156 nucleotidesAO356_19940 and AO356_19945 are separated by 26 nucleotides AO356_19920: AO356_19920 - hypothetical protein, at 4,463,255 to 4,463,968 _19920 AO356_19925: AO356_19925 - AsnC family transcriptional regulator, at 4,464,167 to 4,464,598 _19925 AO356_19930: AO356_19930 - AraC family transcriptional regulator, at 4,464,728 to 4,465,597 _19930 AO356_19935: AO356_19935 - pilus assembly protein PilA, at 4,465,898 to 4,466,092 _19935 AO356_19940: AO356_19940 - pilus assembly protein PilA, at 4,466,249 to 4,466,443 _19940 AO356_19945: AO356_19945 - hypothetical protein, at 4,466,470 to 4,467,000 _19945 Position (kb) 4464 4465 4466Strain fitness (log2 ratio) -2 -1 0 1at 4463.757 kb on - strand, within AO356_19920at 4463.757 kb on - strand, within AO356_19920at 4463.787 kb on - strand, within AO356_19920at 4463.859 kb on + strand, within AO356_19920at 4463.993 kb on - strandat 4464.175 kb on + strandat 4464.176 kb on - strandat 4464.177 kb on + strandat 4464.201 kb on + strandat 4464.202 kb on - strandat 4464.256 kb on + strand, within AO356_19925at 4464.256 kb on + strand, within AO356_19925at 4464.314 kb on + strand, within AO356_19925at 4464.327 kb on + strand, within AO356_19925at 4464.327 kb on + strand, within AO356_19925at 4464.327 kb on + strand, within AO356_19925at 4464.328 kb on - strand, within AO356_19925at 4464.348 kb on - strand, within AO356_19925at 4464.405 kb on + strand, within AO356_19925at 4464.424 kb on - strand, within AO356_19925at 4464.467 kb on + strand, within AO356_19925at 4464.467 kb on + strand, within AO356_19925at 4464.468 kb on - strand, within AO356_19925at 4464.468 kb on - strand, within AO356_19925at 4464.514 kb on + strand, within AO356_19925at 4464.514 kb on + strand, within AO356_19925at 4464.515 kb on - strand, within AO356_19925at 4464.515 kb on - strand, within AO356_19925at 4464.515 kb on - strand, within AO356_19925at 4464.515 kb on - strand, within AO356_19925at 4464.515 kb on - strand, within AO356_19925at 4464.515 kb on - strand, within AO356_19925at 4464.533 kb on + strand, within AO356_19925at 4464.533 kb on + strand, within AO356_19925at 4464.533 kb on + strand, within AO356_19925at 4464.533 kb on + strand, within AO356_19925at 4464.571 kb on + strandat 4464.670 kb on + strandat 4464.670 kb on + strandat 4464.670 kb on + strandat 4464.695 kb on + strandat 4464.695 kb on + strandat 4464.695 kb on + strandat 4464.696 kb on - strandat 4464.697 kb on + strandat 4464.697 kb on + strandat 4464.697 kb on + strandat 4464.698 kb on - strandat 4464.832 kb on - strand, within AO356_19930at 4464.855 kb on + strand, within AO356_19930at 4464.855 kb on + strand, within AO356_19930at 4464.856 kb on - strand, within AO356_19930at 4464.856 kb on - strand, within AO356_19930at 4464.879 kb on + strand, within AO356_19930at 4464.880 kb on - strand, within AO356_19930at 4464.981 kb on + strand, within AO356_19930at 4464.981 kb on + strand, within AO356_19930at 4464.982 kb on - strand, within AO356_19930at 4465.101 kb on + strand, within AO356_19930at 4465.102 kb on - strand, within AO356_19930at 4465.293 kb on + strand, within AO356_19930at 4465.293 kb on + strand, within AO356_19930at 4465.293 kb on + strand, within AO356_19930at 4465.293 kb on + strand, within AO356_19930at 4465.294 kb on - strand, within AO356_19930at 4465.294 kb on - strand, within AO356_19930at 4465.294 kb on - strand, within AO356_19930at 4465.294 kb on - strand, within AO356_19930at 4465.597 kb on + strandat 4465.630 kb on + strandat 4465.630 kb on + strandat 4465.631 kb on - strandat 4465.631 kb on - strandat 4465.631 kb on - strandat 4465.631 kb on - strandat 4465.631 kb on - strandat 4465.631 kb on - strandat 4465.631 kb on - strandat 4465.631 kb on - strandat 4465.631 kb on - strandat 4465.634 kb on + strandat 4465.635 kb on - strandat 4465.640 kb on + strandat 4465.641 kb on - strandat 4465.678 kb on - strandat 4465.679 kb on + strandat 4465.789 kb on - strandat 4465.810 kb on - strandat 4465.810 kb on - strandat 4465.833 kb on + strandat 4465.833 kb on + strandat 4465.833 kb on + strandat 4465.833 kb on + strandat 4465.834 kb on - strandat 4465.860 kb on + strandat 4465.860 kb on + strandat 4465.860 kb on + strandat 4465.860 kb on + strandat 4465.861 kb on - strandat 4465.861 kb on - strandat 4465.873 kb on - strandat 4465.970 kb on + strand, within AO356_19935at 4465.971 kb on - strand, within AO356_19935at 4466.153 kb on + strandat 4466.153 kb on + strandat 4466.154 kb on - strandat 4466.154 kb on - strandat 4466.154 kb on - strandat 4466.164 kb on + strandat 4466.221 kb on + strandat 4466.222 kb on - strandat 4466.222 kb on - strandat 4466.265 kb on + strandat 4466.265 kb on + strandat 4466.266 kb on - strandat 4466.266 kb on - strandat 4466.266 kb on - strandat 4466.321 kb on + strand, within AO356_19940at 4466.321 kb on + strand, within AO356_19940at 4466.426 kb on - strandat 4466.508 kb on - strandat 4466.553 kb on + strand, within AO356_19945

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Per-strain Table

Position Strand Gene LocusTag Fraction Minimal media pH6
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4,463,757 - AO356_19920 0.70 -0.5
4,463,757 - AO356_19920 0.70 -1.2
4,463,787 - AO356_19920 0.75 +0.5
4,463,859 + AO356_19920 0.85 -0.5
4,463,993 - -0.2
4,464,175 + -0.6
4,464,176 - +0.4
4,464,177 + +0.2
4,464,201 + +0.2
4,464,202 - -0.6
4,464,256 + AO356_19925 0.21 -0.1
4,464,256 + AO356_19925 0.21 -0.2
4,464,314 + AO356_19925 0.34 -2.4
4,464,327 + AO356_19925 0.37 -0.2
4,464,327 + AO356_19925 0.37 -0.1
4,464,327 + AO356_19925 0.37 -1.0
4,464,328 - AO356_19925 0.37 -0.6
4,464,348 - AO356_19925 0.42 -0.5
4,464,405 + AO356_19925 0.55 -0.8
4,464,424 - AO356_19925 0.59 -0.1
4,464,467 + AO356_19925 0.69 +0.1
4,464,467 + AO356_19925 0.69 -0.3
4,464,468 - AO356_19925 0.70 +0.3
4,464,468 - AO356_19925 0.70 -0.1
4,464,514 + AO356_19925 0.80 -0.6
4,464,514 + AO356_19925 0.80 -0.3
4,464,515 - AO356_19925 0.81 +0.1
4,464,515 - AO356_19925 0.81 -0.4
4,464,515 - AO356_19925 0.81 +0.1
4,464,515 - AO356_19925 0.81 +0.2
4,464,515 - AO356_19925 0.81 -0.3
4,464,515 - AO356_19925 0.81 +0.3
4,464,533 + AO356_19925 0.85 +0.1
4,464,533 + AO356_19925 0.85 -0.3
4,464,533 + AO356_19925 0.85 -0.7
4,464,533 + AO356_19925 0.85 +0.5
4,464,571 + +1.1
4,464,670 + +0.9
4,464,670 + +0.1
4,464,670 + +0.4
4,464,695 + -0.4
4,464,695 + -0.1
4,464,695 + -0.8
4,464,696 - -0.8
4,464,697 + -0.8
4,464,697 + +0.0
4,464,697 + +0.1
4,464,698 - +0.5
4,464,832 - AO356_19930 0.12 -0.4
4,464,855 + AO356_19930 0.15 -0.2
4,464,855 + AO356_19930 0.15 +1.2
4,464,856 - AO356_19930 0.15 +0.1
4,464,856 - AO356_19930 0.15 +0.9
4,464,879 + AO356_19930 0.17 -0.1
4,464,880 - AO356_19930 0.17 +1.3
4,464,981 + AO356_19930 0.29 -1.8
4,464,981 + AO356_19930 0.29 -0.3
4,464,982 - AO356_19930 0.29 +0.1
4,465,101 + AO356_19930 0.43 +0.0
4,465,102 - AO356_19930 0.43 -0.9
4,465,293 + AO356_19930 0.65 +0.6
4,465,293 + AO356_19930 0.65 +1.0
4,465,293 + AO356_19930 0.65 +1.2
4,465,293 + AO356_19930 0.65 +0.6
4,465,294 - AO356_19930 0.65 +0.8
4,465,294 - AO356_19930 0.65 -2.2
4,465,294 - AO356_19930 0.65 -0.5
4,465,294 - AO356_19930 0.65 +0.7
4,465,597 + -0.4
4,465,630 + -0.6
4,465,630 + +0.5
4,465,631 - -0.1
4,465,631 - +0.4
4,465,631 - -1.4
4,465,631 - -0.6
4,465,631 - +1.2
4,465,631 - -1.2
4,465,631 - +0.2
4,465,631 - -0.3
4,465,631 - +0.0
4,465,634 + -0.4
4,465,635 - +0.2
4,465,640 + +1.6
4,465,641 - +0.5
4,465,678 - +0.3
4,465,679 + -0.2
4,465,789 - +0.8
4,465,810 - +0.2
4,465,810 - +0.5
4,465,833 + +0.4
4,465,833 + +0.4
4,465,833 + +0.1
4,465,833 + +0.1
4,465,834 - +0.6
4,465,860 + -0.7
4,465,860 + +0.2
4,465,860 + -0.5
4,465,860 + -0.3
4,465,861 - -0.4
4,465,861 - -0.4
4,465,873 - -1.6
4,465,970 + AO356_19935 0.37 -0.5
4,465,971 - AO356_19935 0.37 -0.4
4,466,153 + +0.7
4,466,153 + +0.2
4,466,154 - -1.1
4,466,154 - +0.4
4,466,154 - -2.6
4,466,164 + -0.1
4,466,221 + +0.1
4,466,222 - -0.1
4,466,222 - -0.6
4,466,265 + -0.7
4,466,265 + +0.5
4,466,266 - +0.1
4,466,266 - -2.4
4,466,266 - -1.0
4,466,321 + AO356_19940 0.37 +0.6
4,466,321 + AO356_19940 0.37 -1.3
4,466,426 - +1.2
4,466,508 - -1.0
4,466,553 + AO356_19945 0.16 -0.3

Or see this region's nucleotide sequence