Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03900

Experiment: Minimal media pH6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03895 and AO356_03900 are separated by 110 nucleotidesAO356_03900 and AO356_03905 are separated by 13 nucleotides AO356_03895: AO356_03895 - glycosyl transferase family 2, at 863,177 to 866,758 _03895 AO356_03900: AO356_03900 - flagellar biosynthesis protein FlgL, at 866,869 to 868,434 _03900 AO356_03905: AO356_03905 - flagellar biosynthesis protein FlgK, at 868,448 to 870,514 _03905 Position (kb) 866 867 868 869Strain fitness (log2 ratio) -1 0 1 2at 865.905 kb on + strand, within AO356_03895at 865.906 kb on - strand, within AO356_03895at 866.266 kb on + strand, within AO356_03895at 866.266 kb on + strand, within AO356_03895at 866.266 kb on + strand, within AO356_03895at 866.267 kb on - strand, within AO356_03895at 866.267 kb on - strand, within AO356_03895at 866.341 kb on + strand, within AO356_03895at 866.367 kb on + strand, within AO356_03895at 866.367 kb on + strand, within AO356_03895at 866.367 kb on + strand, within AO356_03895at 866.367 kb on + strand, within AO356_03895at 866.367 kb on + strand, within AO356_03895at 866.367 kb on + strand, within AO356_03895at 866.367 kb on + strand, within AO356_03895at 866.367 kb on + strand, within AO356_03895at 866.367 kb on + strand, within AO356_03895at 866.368 kb on - strand, within AO356_03895at 866.368 kb on - strand, within AO356_03895at 866.368 kb on - strand, within AO356_03895at 866.368 kb on - strand, within AO356_03895at 866.368 kb on - strand, within AO356_03895at 866.368 kb on - strand, within AO356_03895at 866.368 kb on - strand, within AO356_03895at 866.368 kb on - strand, within AO356_03895at 866.368 kb on - strand, within AO356_03895at 866.368 kb on - strand, within AO356_03895at 866.385 kb on - strand, within AO356_03895at 866.411 kb on + strandat 866.412 kb on - strandat 866.412 kb on - strandat 866.412 kb on - strandat 866.412 kb on - strandat 866.412 kb on - strandat 866.569 kb on - strandat 866.578 kb on + strandat 866.579 kb on - strandat 866.667 kb on + strandat 866.667 kb on + strandat 866.668 kb on - strandat 866.817 kb on + strandat 866.818 kb on - strandat 866.818 kb on - strandat 866.818 kb on - strandat 866.819 kb on + strandat 866.819 kb on + strandat 866.820 kb on - strandat 866.843 kb on + strandat 866.843 kb on + strandat 866.843 kb on + strandat 866.844 kb on - strandat 866.844 kb on - strandat 866.845 kb on + strandat 866.845 kb on + strandat 866.846 kb on - strandat 866.846 kb on - strandat 867.240 kb on + strand, within AO356_03900at 867.241 kb on - strand, within AO356_03900at 867.378 kb on - strand, within AO356_03900at 867.443 kb on + strand, within AO356_03900at 867.444 kb on - strand, within AO356_03900at 867.549 kb on + strand, within AO356_03900at 867.549 kb on + strand, within AO356_03900at 867.550 kb on - strand, within AO356_03900at 867.649 kb on - strand, within AO356_03900at 867.651 kb on + strand, within AO356_03900at 867.651 kb on + strand, within AO356_03900at 867.651 kb on + strand, within AO356_03900at 867.652 kb on - strand, within AO356_03900at 867.652 kb on - strand, within AO356_03900at 867.779 kb on + strand, within AO356_03900at 867.779 kb on + strand, within AO356_03900at 867.779 kb on + strand, within AO356_03900at 867.779 kb on + strand, within AO356_03900at 867.780 kb on - strand, within AO356_03900at 867.968 kb on + strand, within AO356_03900at 867.968 kb on + strand, within AO356_03900at 867.969 kb on - strand, within AO356_03900at 867.969 kb on - strand, within AO356_03900at 867.969 kb on - strand, within AO356_03900at 867.969 kb on - strand, within AO356_03900at 867.974 kb on + strand, within AO356_03900at 867.974 kb on + strand, within AO356_03900at 867.974 kb on + strand, within AO356_03900at 867.974 kb on + strand, within AO356_03900at 867.975 kb on - strand, within AO356_03900at 867.975 kb on - strand, within AO356_03900at 867.975 kb on - strand, within AO356_03900at 868.004 kb on - strand, within AO356_03900at 868.034 kb on + strand, within AO356_03900at 868.034 kb on + strand, within AO356_03900at 868.034 kb on + strand, within AO356_03900at 868.034 kb on + strand, within AO356_03900at 868.034 kb on + strand, within AO356_03900at 868.034 kb on + strand, within AO356_03900at 868.035 kb on - strand, within AO356_03900at 868.035 kb on - strand, within AO356_03900at 868.035 kb on - strand, within AO356_03900at 868.035 kb on - strand, within AO356_03900at 868.035 kb on - strand, within AO356_03900at 868.130 kb on + strand, within AO356_03900at 868.130 kb on + strand, within AO356_03900at 868.250 kb on + strand, within AO356_03900at 868.250 kb on + strand, within AO356_03900at 868.389 kb on - strandat 868.409 kb on + strandat 868.410 kb on - strandat 868.422 kb on + strandat 868.422 kb on + strandat 868.423 kb on - strandat 868.449 kb on + strandat 868.515 kb on + strandat 868.516 kb on - strandat 868.516 kb on - strandat 868.516 kb on - strandat 868.516 kb on - strandat 868.516 kb on - strandat 868.516 kb on - strandat 868.516 kb on - strandat 868.518 kb on + strandat 868.518 kb on + strandat 868.518 kb on + strandat 868.721 kb on + strand, within AO356_03905at 868.998 kb on + strand, within AO356_03905at 868.999 kb on - strand, within AO356_03905at 868.999 kb on - strand, within AO356_03905at 869.100 kb on + strand, within AO356_03905at 869.100 kb on + strand, within AO356_03905at 869.100 kb on + strand, within AO356_03905at 869.101 kb on - strand, within AO356_03905at 869.397 kb on + strand, within AO356_03905at 869.397 kb on + strand, within AO356_03905at 869.397 kb on + strand, within AO356_03905at 869.398 kb on - strand, within AO356_03905at 869.398 kb on - strand, within AO356_03905at 869.428 kb on - strand, within AO356_03905

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Per-strain Table

Position Strand Gene LocusTag Fraction Minimal media pH6
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865,905 + AO356_03895 0.76 +0.5
865,906 - AO356_03895 0.76 +0.7
866,266 + AO356_03895 0.86 -0.6
866,266 + AO356_03895 0.86 +0.7
866,266 + AO356_03895 0.86 +0.4
866,267 - AO356_03895 0.86 +0.3
866,267 - AO356_03895 0.86 +0.6
866,341 + AO356_03895 0.88 -0.1
866,367 + AO356_03895 0.89 +2.5
866,367 + AO356_03895 0.89 +0.3
866,367 + AO356_03895 0.89 -0.2
866,367 + AO356_03895 0.89 +0.6
866,367 + AO356_03895 0.89 -0.4
866,367 + AO356_03895 0.89 +0.6
866,367 + AO356_03895 0.89 +0.5
866,367 + AO356_03895 0.89 +1.0
866,367 + AO356_03895 0.89 +1.2
866,368 - AO356_03895 0.89 -0.2
866,368 - AO356_03895 0.89 +0.1
866,368 - AO356_03895 0.89 +0.9
866,368 - AO356_03895 0.89 +0.6
866,368 - AO356_03895 0.89 +0.9
866,368 - AO356_03895 0.89 -0.5
866,368 - AO356_03895 0.89 +1.1
866,368 - AO356_03895 0.89 +1.0
866,368 - AO356_03895 0.89 +0.3
866,368 - AO356_03895 0.89 +0.6
866,385 - AO356_03895 0.90 +0.6
866,411 + +0.1
866,412 - +1.3
866,412 - +0.9
866,412 - +0.4
866,412 - +0.3
866,412 - +1.2
866,569 - +0.7
866,578 + +0.2
866,579 - +0.4
866,667 + +0.6
866,667 + +0.3
866,668 - +0.8
866,817 + -0.6
866,818 - +0.1
866,818 - +1.2
866,818 - -0.3
866,819 + +0.2
866,819 + +1.3
866,820 - -0.2
866,843 + +0.3
866,843 + +1.6
866,843 + +0.2
866,844 - +1.1
866,844 - +0.9
866,845 + +0.8
866,845 + +0.4
866,846 - +0.2
866,846 - -0.9
867,240 + AO356_03900 0.24 +1.5
867,241 - AO356_03900 0.24 +0.4
867,378 - AO356_03900 0.33 +1.9
867,443 + AO356_03900 0.37 +0.5
867,444 - AO356_03900 0.37 +1.4
867,549 + AO356_03900 0.43 +0.5
867,549 + AO356_03900 0.43 +0.2
867,550 - AO356_03900 0.43 +0.7
867,649 - AO356_03900 0.50 +2.0
867,651 + AO356_03900 0.50 +1.9
867,651 + AO356_03900 0.50 +0.5
867,651 + AO356_03900 0.50 +1.2
867,652 - AO356_03900 0.50 +0.6
867,652 - AO356_03900 0.50 +0.2
867,779 + AO356_03900 0.58 +0.4
867,779 + AO356_03900 0.58 +1.5
867,779 + AO356_03900 0.58 +1.4
867,779 + AO356_03900 0.58 +0.9
867,780 - AO356_03900 0.58 +0.2
867,968 + AO356_03900 0.70 +0.8
867,968 + AO356_03900 0.70 +0.7
867,969 - AO356_03900 0.70 +0.8
867,969 - AO356_03900 0.70 +0.4
867,969 - AO356_03900 0.70 +0.6
867,969 - AO356_03900 0.70 +1.7
867,974 + AO356_03900 0.71 +1.0
867,974 + AO356_03900 0.71 +1.1
867,974 + AO356_03900 0.71 +1.1
867,974 + AO356_03900 0.71 +0.9
867,975 - AO356_03900 0.71 -0.9
867,975 - AO356_03900 0.71 +0.6
867,975 - AO356_03900 0.71 +0.2
868,004 - AO356_03900 0.72 +0.9
868,034 + AO356_03900 0.74 +0.3
868,034 + AO356_03900 0.74 +0.8
868,034 + AO356_03900 0.74 +0.9
868,034 + AO356_03900 0.74 +0.7
868,034 + AO356_03900 0.74 +1.0
868,034 + AO356_03900 0.74 +0.6
868,035 - AO356_03900 0.74 +0.5
868,035 - AO356_03900 0.74 +0.2
868,035 - AO356_03900 0.74 +1.5
868,035 - AO356_03900 0.74 +0.9
868,035 - AO356_03900 0.74 +0.8
868,130 + AO356_03900 0.81 +1.9
868,130 + AO356_03900 0.81 +1.7
868,250 + AO356_03900 0.88 +1.1
868,250 + AO356_03900 0.88 +0.6
868,389 - +1.1
868,409 + +1.2
868,410 - +2.0
868,422 + +0.2
868,422 + +0.5
868,423 - +0.8
868,449 + +0.1
868,515 + +0.5
868,516 - +0.7
868,516 - +1.2
868,516 - +2.2
868,516 - +1.1
868,516 - +1.9
868,516 - +1.2
868,516 - +1.3
868,518 + +1.3
868,518 + +1.0
868,518 + +2.2
868,721 + AO356_03905 0.13 -0.0
868,998 + AO356_03905 0.27 +0.8
868,999 - AO356_03905 0.27 +0.6
868,999 - AO356_03905 0.27 +1.0
869,100 + AO356_03905 0.32 +1.5
869,100 + AO356_03905 0.32 +0.9
869,100 + AO356_03905 0.32 +2.2
869,101 - AO356_03905 0.32 +1.2
869,397 + AO356_03905 0.46 +1.3
869,397 + AO356_03905 0.46 +1.5
869,397 + AO356_03905 0.46 +1.4
869,398 - AO356_03905 0.46 -0.2
869,398 - AO356_03905 0.46 +1.6
869,428 - AO356_03905 0.47 +1.0

Or see this region's nucleotide sequence