Experiment: Minimal media pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_03490 and AO356_03495 are separated by 4 nucleotides AO356_03495 and AO356_03500 are separated by 183 nucleotides AO356_03500 and AO356_03505 are separated by 348 nucleotides
AO356_03490: AO356_03490 - 3-demethylubiquinone-9 3-methyltransferase, at 779,272 to 779,970
_03490
AO356_03495: AO356_03495 - phosphoglycolate phosphatase, at 779,975 to 780,646
_03495
AO356_03500: AO356_03500 - 3-oxoacyl-ACP reductase, at 780,830 to 781,570
_03500
AO356_03505: AO356_03505 - hypothetical protein, at 781,919 to 782,845
_03505
Position (kb) 780
781
782 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 779.968 kb on + strand at 779.968 kb on + strand at 779.968 kb on + strand at 779.968 kb on + strand at 779.968 kb on + strand at 780.207 kb on - strand, within AO356_03495 at 780.536 kb on + strand, within AO356_03495 at 780.537 kb on - strand, within AO356_03495 at 780.537 kb on - strand, within AO356_03495 at 780.542 kb on + strand, within AO356_03495 at 780.543 kb on - strand, within AO356_03495 at 780.812 kb on + strand at 780.813 kb on - strand at 780.813 kb on - strand at 780.830 kb on - strand at 780.839 kb on + strand at 780.839 kb on + strand at 780.948 kb on + strand, within AO356_03500 at 780.989 kb on + strand, within AO356_03500 at 780.989 kb on + strand, within AO356_03500 at 781.067 kb on + strand, within AO356_03500 at 781.067 kb on + strand, within AO356_03500 at 781.068 kb on - strand, within AO356_03500 at 781.068 kb on - strand, within AO356_03500 at 781.150 kb on + strand, within AO356_03500 at 781.150 kb on + strand, within AO356_03500 at 781.313 kb on + strand, within AO356_03500 at 781.313 kb on + strand, within AO356_03500 at 781.508 kb on + strand at 781.508 kb on + strand at 781.508 kb on + strand at 781.515 kb on - strand at 781.568 kb on + strand at 781.568 kb on + strand at 781.569 kb on - strand at 781.569 kb on - strand at 781.569 kb on - strand at 781.569 kb on - strand at 781.593 kb on + strand at 781.736 kb on + strand at 781.767 kb on + strand at 781.768 kb on - strand at 781.768 kb on - strand at 781.789 kb on + strand at 781.789 kb on + strand at 781.789 kb on + strand at 781.789 kb on + strand at 781.789 kb on + strand at 781.789 kb on + strand at 781.790 kb on - strand at 781.790 kb on - strand at 781.790 kb on - strand at 781.790 kb on - strand at 781.790 kb on - strand at 781.790 kb on - strand at 781.790 kb on - strand at 781.832 kb on - strand at 781.832 kb on - strand at 781.851 kb on - strand at 781.851 kb on - strand at 781.898 kb on + strand at 781.898 kb on + strand at 781.898 kb on + strand at 781.898 kb on + strand at 781.898 kb on + strand at 781.898 kb on + strand at 781.898 kb on + strand at 781.898 kb on + strand at 781.898 kb on + strand at 781.899 kb on - strand at 781.899 kb on - strand at 781.899 kb on - strand at 781.918 kb on + strand at 782.055 kb on + strand, within AO356_03505 at 782.055 kb on + strand, within AO356_03505 at 782.056 kb on - strand, within AO356_03505 at 782.138 kb on + strand, within AO356_03505 at 782.138 kb on + strand, within AO356_03505 at 782.138 kb on + strand, within AO356_03505 at 782.139 kb on - strand, within AO356_03505 at 782.201 kb on + strand, within AO356_03505 at 782.201 kb on + strand, within AO356_03505 at 782.201 kb on + strand, within AO356_03505 at 782.201 kb on + strand, within AO356_03505 at 782.201 kb on + strand, within AO356_03505 at 782.202 kb on - strand, within AO356_03505 at 782.202 kb on - strand, within AO356_03505 at 782.202 kb on - strand, within AO356_03505 at 782.202 kb on - strand, within AO356_03505 at 782.241 kb on + strand, within AO356_03505 at 782.242 kb on - strand, within AO356_03505
Per-strain Table
Position Strand Gene LocusTag Fraction Minimal media pH6 remove 779,968 + +0.5 779,968 + -0.6 779,968 + -0.2 779,968 + +0.8 779,968 + +0.2 780,207 - AO356_03495 0.35 -2.4 780,536 + AO356_03495 0.83 -1.5 780,537 - AO356_03495 0.84 -1.6 780,537 - AO356_03495 0.84 -2.8 780,542 + AO356_03495 0.84 -2.3 780,543 - AO356_03495 0.85 -1.9 780,812 + -0.1 780,813 - -0.5 780,813 - +0.1 780,830 - +0.6 780,839 + -1.1 780,839 + -0.8 780,948 + AO356_03500 0.16 -1.3 780,989 + AO356_03500 0.21 -1.2 780,989 + AO356_03500 0.21 -0.8 781,067 + AO356_03500 0.32 -1.6 781,067 + AO356_03500 0.32 +0.0 781,068 - AO356_03500 0.32 -0.8 781,068 - AO356_03500 0.32 -1.3 781,150 + AO356_03500 0.43 -0.3 781,150 + AO356_03500 0.43 +1.0 781,313 + AO356_03500 0.65 -2.1 781,313 + AO356_03500 0.65 +0.5 781,508 + +0.3 781,508 + -0.8 781,508 + -0.6 781,515 - -0.9 781,568 + -0.1 781,568 + +0.1 781,569 - -0.3 781,569 - -0.6 781,569 - +0.2 781,569 - +0.3 781,593 + +0.9 781,736 + +0.3 781,767 + +1.4 781,768 - -0.0 781,768 - +0.1 781,789 + +0.4 781,789 + +0.1 781,789 + +1.0 781,789 + +1.1 781,789 + +0.4 781,789 + +0.2 781,790 - +0.1 781,790 - +0.7 781,790 - +1.6 781,790 - +0.4 781,790 - -0.0 781,790 - -1.3 781,790 - +0.5 781,832 - -0.1 781,832 - -0.3 781,851 - +0.7 781,851 - +0.3 781,898 + -0.7 781,898 + +1.0 781,898 + +0.3 781,898 + +0.5 781,898 + +1.4 781,898 + +0.6 781,898 + +0.5 781,898 + +0.8 781,898 + -0.4 781,899 - -0.7 781,899 - -0.2 781,899 - +0.0 781,918 + +0.3 782,055 + AO356_03505 0.15 +0.5 782,055 + AO356_03505 0.15 +2.0 782,056 - AO356_03505 0.15 +0.1 782,138 + AO356_03505 0.24 +0.1 782,138 + AO356_03505 0.24 -0.5 782,138 + AO356_03505 0.24 -0.5 782,139 - AO356_03505 0.24 -0.2 782,201 + AO356_03505 0.30 -0.2 782,201 + AO356_03505 0.30 -1.0 782,201 + AO356_03505 0.30 -1.3 782,201 + AO356_03505 0.30 +0.2 782,201 + AO356_03505 0.30 -1.3 782,202 - AO356_03505 0.31 +0.6 782,202 - AO356_03505 0.31 -0.5 782,202 - AO356_03505 0.31 -0.1 782,202 - AO356_03505 0.31 -0.7 782,241 + AO356_03505 0.35 +1.0 782,242 - AO356_03505 0.35 -0.3
Or see this region's nucleotide sequence