Experiment: Minimal media pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00955 and AO356_00960 are separated by 3 nucleotides AO356_00960 and AO356_00965 overlap by 4 nucleotides
AO356_00955: AO356_00955 - LacI family transcriptional regulator, at 217,127 to 218,146
_00955
AO356_00960: AO356_00960 - ABC transporter permease, at 218,150 to 219,127
_00960
AO356_00965: AO356_00965 - sugar ABC transporter ATP-binding protein, at 219,124 to 220,677
_00965
Position (kb) 218
219
220 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 217.183 kb on + strand at 217.183 kb on + strand at 217.184 kb on - strand at 217.226 kb on - strand at 217.311 kb on + strand, within AO356_00955 at 217.311 kb on + strand, within AO356_00955 at 217.311 kb on + strand, within AO356_00955 at 217.312 kb on - strand, within AO356_00955 at 217.312 kb on - strand, within AO356_00955 at 217.312 kb on - strand, within AO356_00955 at 217.507 kb on + strand, within AO356_00955 at 217.507 kb on + strand, within AO356_00955 at 217.508 kb on - strand, within AO356_00955 at 217.508 kb on - strand, within AO356_00955 at 217.508 kb on - strand, within AO356_00955 at 217.653 kb on + strand, within AO356_00955 at 217.663 kb on - strand, within AO356_00955 at 217.827 kb on + strand, within AO356_00955 at 217.827 kb on + strand, within AO356_00955 at 217.828 kb on - strand, within AO356_00955 at 217.896 kb on + strand, within AO356_00955 at 217.897 kb on - strand, within AO356_00955 at 217.897 kb on - strand, within AO356_00955 at 217.929 kb on + strand, within AO356_00955 at 217.929 kb on + strand, within AO356_00955 at 217.930 kb on - strand, within AO356_00955 at 217.930 kb on - strand, within AO356_00955 at 218.013 kb on + strand, within AO356_00955 at 218.013 kb on + strand, within AO356_00955 at 218.013 kb on + strand, within AO356_00955 at 218.014 kb on - strand, within AO356_00955 at 218.103 kb on + strand at 218.126 kb on + strand at 218.127 kb on - strand at 218.127 kb on - strand at 218.127 kb on - strand at 218.181 kb on + strand at 218.182 kb on - strand at 218.182 kb on - strand at 218.305 kb on + strand, within AO356_00960 at 218.306 kb on - strand, within AO356_00960 at 218.481 kb on + strand, within AO356_00960 at 218.481 kb on + strand, within AO356_00960 at 218.623 kb on + strand, within AO356_00960 at 218.624 kb on - strand, within AO356_00960 at 218.670 kb on + strand, within AO356_00960 at 218.670 kb on + strand, within AO356_00960 at 218.670 kb on + strand, within AO356_00960 at 218.671 kb on - strand, within AO356_00960 at 218.997 kb on + strand, within AO356_00960 at 218.998 kb on - strand, within AO356_00960 at 219.069 kb on + strand at 219.069 kb on + strand at 219.084 kb on + strand at 219.084 kb on + strand at 219.085 kb on - strand at 219.085 kb on - strand at 219.138 kb on + strand at 219.356 kb on + strand, within AO356_00965 at 219.356 kb on + strand, within AO356_00965 at 219.357 kb on - strand, within AO356_00965 at 219.357 kb on - strand, within AO356_00965 at 219.357 kb on - strand, within AO356_00965 at 219.357 kb on - strand, within AO356_00965 at 219.357 kb on - strand, within AO356_00965 at 219.983 kb on + strand, within AO356_00965 at 220.079 kb on + strand, within AO356_00965 at 220.080 kb on - strand, within AO356_00965
Per-strain Table
Position Strand Gene LocusTag Fraction Minimal media pH6 remove 217,183 + +1.0 217,183 + -0.6 217,184 - +0.3 217,226 - -0.6 217,311 + AO356_00955 0.18 +0.4 217,311 + AO356_00955 0.18 -2.3 217,311 + AO356_00955 0.18 +0.0 217,312 - AO356_00955 0.18 +0.4 217,312 - AO356_00955 0.18 -0.9 217,312 - AO356_00955 0.18 +0.3 217,507 + AO356_00955 0.37 -0.1 217,507 + AO356_00955 0.37 -0.2 217,508 - AO356_00955 0.37 -1.4 217,508 - AO356_00955 0.37 -1.2 217,508 - AO356_00955 0.37 -1.0 217,653 + AO356_00955 0.52 -0.6 217,663 - AO356_00955 0.53 +0.2 217,827 + AO356_00955 0.69 +0.3 217,827 + AO356_00955 0.69 -1.5 217,828 - AO356_00955 0.69 -0.7 217,896 + AO356_00955 0.75 +0.0 217,897 - AO356_00955 0.75 -1.6 217,897 - AO356_00955 0.75 -0.5 217,929 + AO356_00955 0.79 -0.8 217,929 + AO356_00955 0.79 -0.3 217,930 - AO356_00955 0.79 -1.6 217,930 - AO356_00955 0.79 -2.1 218,013 + AO356_00955 0.87 -1.5 218,013 + AO356_00955 0.87 -0.7 218,013 + AO356_00955 0.87 -1.2 218,014 - AO356_00955 0.87 -1.2 218,103 + -0.4 218,126 + -1.9 218,127 - -0.8 218,127 - -1.1 218,127 - -0.9 218,181 + -0.3 218,182 - +1.2 218,182 - +0.4 218,305 + AO356_00960 0.16 -1.9 218,306 - AO356_00960 0.16 -1.0 218,481 + AO356_00960 0.34 -0.3 218,481 + AO356_00960 0.34 -2.0 218,623 + AO356_00960 0.48 +0.3 218,624 - AO356_00960 0.48 -0.3 218,670 + AO356_00960 0.53 -0.9 218,670 + AO356_00960 0.53 -1.0 218,670 + AO356_00960 0.53 -1.4 218,671 - AO356_00960 0.53 -2.0 218,997 + AO356_00960 0.87 -2.0 218,998 - AO356_00960 0.87 -0.1 219,069 + -2.4 219,069 + -1.3 219,084 + -3.6 219,084 + -1.5 219,085 - -1.0 219,085 - -0.9 219,138 + -1.1 219,356 + AO356_00965 0.15 -0.6 219,356 + AO356_00965 0.15 +0.1 219,357 - AO356_00965 0.15 +0.3 219,357 - AO356_00965 0.15 -1.0 219,357 - AO356_00965 0.15 +0.0 219,357 - AO356_00965 0.15 -0.6 219,357 - AO356_00965 0.15 +0.4 219,983 + AO356_00965 0.55 -1.4 220,079 + AO356_00965 0.61 +0.9 220,080 - AO356_00965 0.62 -0.7
Or see this region's nucleotide sequence