Experiment: acetate; Light intensity 18 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3711 and Rru_AR0070 are separated by 269 nucleotides Rru_AR0070 and Rru_A3712 are separated by 118 nucleotides Rru_A3712 and Rru_A3713 are separated by 88 nucleotides
Rru_A3711: Rru_A3711 - Thioredoxin-related (NCBI), at 4,261,100 to 4,262,038
_A3711
Rru_AR0070: Rru_AR0070 - tRNA-Gly (NCBI), at 4,262,308 to 4,262,382
_AR0070
Rru_A3712: Rru_A3712 - Lysine exporter protein (LYSE/YGGA) (NCBI), at 4,262,501 to 4,263,136
_A3712
Rru_A3713: Rru_A3713 - Protein of unknown function DUF159 (NCBI), at 4,263,225 to 4,263,899
_A3713
Position (kb)
4262
4263 Strain fitness (log2 ratio)
-1
0
1 at 4261.551 kb on + strand, within Rru_A3711 at 4261.551 kb on + strand, within Rru_A3711 at 4261.551 kb on + strand, within Rru_A3711 at 4261.551 kb on + strand, within Rru_A3711 at 4261.552 kb on - strand, within Rru_A3711 at 4261.552 kb on - strand, within Rru_A3711 at 4261.552 kb on - strand, within Rru_A3711 at 4261.552 kb on - strand, within Rru_A3711 at 4261.725 kb on + strand, within Rru_A3711 at 4261.726 kb on - strand, within Rru_A3711 at 4261.726 kb on - strand, within Rru_A3711 at 4261.726 kb on - strand, within Rru_A3711 at 4261.943 kb on - strand, within Rru_A3711 at 4262.044 kb on - strand at 4262.044 kb on - strand at 4262.044 kb on - strand at 4262.093 kb on + strand at 4262.093 kb on + strand at 4262.406 kb on + strand at 4262.406 kb on + strand at 4262.447 kb on + strand at 4262.447 kb on + strand at 4262.448 kb on - strand at 4262.448 kb on - strand at 4262.448 kb on - strand at 4262.448 kb on - strand at 4262.452 kb on + strand at 4262.453 kb on - strand at 4262.453 kb on - strand at 4262.528 kb on - strand at 4262.747 kb on + strand, within Rru_A3712 at 4262.747 kb on + strand, within Rru_A3712 at 4262.770 kb on + strand, within Rru_A3712 at 4262.770 kb on + strand, within Rru_A3712 at 4262.770 kb on + strand, within Rru_A3712 at 4262.771 kb on - strand, within Rru_A3712 at 4262.993 kb on + strand, within Rru_A3712 at 4262.993 kb on + strand, within Rru_A3712 at 4262.993 kb on + strand, within Rru_A3712 at 4262.994 kb on - strand, within Rru_A3712 at 4262.994 kb on - strand, within Rru_A3712 at 4262.994 kb on - strand, within Rru_A3712 at 4263.042 kb on - strand, within Rru_A3712 at 4263.042 kb on - strand, within Rru_A3712 at 4263.042 kb on - strand, within Rru_A3712 at 4263.045 kb on + strand, within Rru_A3712 at 4263.046 kb on - strand, within Rru_A3712 at 4263.134 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 18 uM remove 4,261,551 + Rru_A3711 0.48 +0.0 4,261,551 + Rru_A3711 0.48 -1.0 4,261,551 + Rru_A3711 0.48 -1.0 4,261,551 + Rru_A3711 0.48 +0.0 4,261,552 - Rru_A3711 0.48 +0.8 4,261,552 - Rru_A3711 0.48 +0.0 4,261,552 - Rru_A3711 0.48 +1.7 4,261,552 - Rru_A3711 0.48 +0.0 4,261,725 + Rru_A3711 0.67 +0.0 4,261,726 - Rru_A3711 0.67 +0.9 4,261,726 - Rru_A3711 0.67 +0.0 4,261,726 - Rru_A3711 0.67 +0.0 4,261,943 - Rru_A3711 0.90 +0.0 4,262,044 - +0.2 4,262,044 - -0.6 4,262,044 - +0.0 4,262,093 + -1.0 4,262,093 + -0.5 4,262,406 + +0.0 4,262,406 + +0.7 4,262,447 + +0.6 4,262,447 + +0.5 4,262,448 - +0.0 4,262,448 - +0.0 4,262,448 - +0.0 4,262,448 - -1.0 4,262,452 + +0.9 4,262,453 - +1.5 4,262,453 - +1.3 4,262,528 - +0.0 4,262,747 + Rru_A3712 0.39 -1.0 4,262,747 + Rru_A3712 0.39 +0.0 4,262,770 + Rru_A3712 0.42 +0.0 4,262,770 + Rru_A3712 0.42 +0.0 4,262,770 + Rru_A3712 0.42 +0.0 4,262,771 - Rru_A3712 0.42 +0.7 4,262,993 + Rru_A3712 0.77 +0.0 4,262,993 + Rru_A3712 0.77 +0.4 4,262,993 + Rru_A3712 0.77 -0.5 4,262,994 - Rru_A3712 0.78 +0.0 4,262,994 - Rru_A3712 0.78 +0.0 4,262,994 - Rru_A3712 0.78 +0.0 4,263,042 - Rru_A3712 0.85 +0.0 4,263,042 - Rru_A3712 0.85 +0.0 4,263,042 - Rru_A3712 0.85 -1.2 4,263,045 + Rru_A3712 0.86 +0.0 4,263,046 - Rru_A3712 0.86 +0.0 4,263,134 + -0.1
Or see this region's nucleotide sequence