Strain Fitness in Rhodospirillum rubrum S1H around Rru_AR0070

Experiment: acetate; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3711 and Rru_AR0070 are separated by 269 nucleotidesRru_AR0070 and Rru_A3712 are separated by 118 nucleotidesRru_A3712 and Rru_A3713 are separated by 88 nucleotides Rru_A3711: Rru_A3711 - Thioredoxin-related (NCBI), at 4,261,100 to 4,262,038 _A3711 Rru_AR0070: Rru_AR0070 - tRNA-Gly (NCBI), at 4,262,308 to 4,262,382 _AR0070 Rru_A3712: Rru_A3712 - Lysine exporter protein (LYSE/YGGA) (NCBI), at 4,262,501 to 4,263,136 _A3712 Rru_A3713: Rru_A3713 - Protein of unknown function DUF159 (NCBI), at 4,263,225 to 4,263,899 _A3713 Position (kb) 4262 4263Strain fitness (log2 ratio) -1 0 1at 4261.551 kb on + strand, within Rru_A3711at 4261.551 kb on + strand, within Rru_A3711at 4261.551 kb on + strand, within Rru_A3711at 4261.551 kb on + strand, within Rru_A3711at 4261.552 kb on - strand, within Rru_A3711at 4261.552 kb on - strand, within Rru_A3711at 4261.552 kb on - strand, within Rru_A3711at 4261.552 kb on - strand, within Rru_A3711at 4261.725 kb on + strand, within Rru_A3711at 4261.726 kb on - strand, within Rru_A3711at 4261.726 kb on - strand, within Rru_A3711at 4261.726 kb on - strand, within Rru_A3711at 4261.943 kb on - strand, within Rru_A3711at 4262.044 kb on - strandat 4262.044 kb on - strandat 4262.044 kb on - strandat 4262.093 kb on + strandat 4262.093 kb on + strandat 4262.406 kb on + strandat 4262.406 kb on + strandat 4262.447 kb on + strandat 4262.447 kb on + strandat 4262.448 kb on - strandat 4262.448 kb on - strandat 4262.448 kb on - strandat 4262.448 kb on - strandat 4262.452 kb on + strandat 4262.453 kb on - strandat 4262.453 kb on - strandat 4262.528 kb on - strandat 4262.747 kb on + strand, within Rru_A3712at 4262.747 kb on + strand, within Rru_A3712at 4262.770 kb on + strand, within Rru_A3712at 4262.770 kb on + strand, within Rru_A3712at 4262.770 kb on + strand, within Rru_A3712at 4262.771 kb on - strand, within Rru_A3712at 4262.993 kb on + strand, within Rru_A3712at 4262.993 kb on + strand, within Rru_A3712at 4262.993 kb on + strand, within Rru_A3712at 4262.994 kb on - strand, within Rru_A3712at 4262.994 kb on - strand, within Rru_A3712at 4262.994 kb on - strand, within Rru_A3712at 4263.042 kb on - strand, within Rru_A3712at 4263.042 kb on - strand, within Rru_A3712at 4263.042 kb on - strand, within Rru_A3712at 4263.045 kb on + strand, within Rru_A3712at 4263.046 kb on - strand, within Rru_A3712at 4263.134 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 18 uM
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4,261,551 + Rru_A3711 0.48 +0.0
4,261,551 + Rru_A3711 0.48 -1.0
4,261,551 + Rru_A3711 0.48 -1.0
4,261,551 + Rru_A3711 0.48 +0.0
4,261,552 - Rru_A3711 0.48 +0.8
4,261,552 - Rru_A3711 0.48 +0.0
4,261,552 - Rru_A3711 0.48 +1.7
4,261,552 - Rru_A3711 0.48 +0.0
4,261,725 + Rru_A3711 0.67 +0.0
4,261,726 - Rru_A3711 0.67 +0.9
4,261,726 - Rru_A3711 0.67 +0.0
4,261,726 - Rru_A3711 0.67 +0.0
4,261,943 - Rru_A3711 0.90 +0.0
4,262,044 - +0.2
4,262,044 - -0.6
4,262,044 - +0.0
4,262,093 + -1.0
4,262,093 + -0.5
4,262,406 + +0.0
4,262,406 + +0.7
4,262,447 + +0.6
4,262,447 + +0.5
4,262,448 - +0.0
4,262,448 - +0.0
4,262,448 - +0.0
4,262,448 - -1.0
4,262,452 + +0.9
4,262,453 - +1.5
4,262,453 - +1.3
4,262,528 - +0.0
4,262,747 + Rru_A3712 0.39 -1.0
4,262,747 + Rru_A3712 0.39 +0.0
4,262,770 + Rru_A3712 0.42 +0.0
4,262,770 + Rru_A3712 0.42 +0.0
4,262,770 + Rru_A3712 0.42 +0.0
4,262,771 - Rru_A3712 0.42 +0.7
4,262,993 + Rru_A3712 0.77 +0.0
4,262,993 + Rru_A3712 0.77 +0.4
4,262,993 + Rru_A3712 0.77 -0.5
4,262,994 - Rru_A3712 0.78 +0.0
4,262,994 - Rru_A3712 0.78 +0.0
4,262,994 - Rru_A3712 0.78 +0.0
4,263,042 - Rru_A3712 0.85 +0.0
4,263,042 - Rru_A3712 0.85 +0.0
4,263,042 - Rru_A3712 0.85 -1.2
4,263,045 + Rru_A3712 0.86 +0.0
4,263,046 - Rru_A3712 0.86 +0.0
4,263,134 + -0.1

Or see this region's nucleotide sequence