Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3116

Experiment: acetate; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3115 and Rru_A3116 are separated by 13 nucleotidesRru_A3116 and Rru_A3117 are separated by 36 nucleotidesRru_A3117 and Rru_A3118 are separated by 311 nucleotides Rru_A3115: Rru_A3115 - ATPase (NCBI), at 3,592,310 to 3,593,335 _A3115 Rru_A3116: Rru_A3116 - hypothetical protein (NCBI), at 3,593,349 to 3,594,980 _A3116 Rru_A3117: Rru_A3117 - Polysaccharide export protein (NCBI), at 3,595,017 to 3,595,646 _A3117 Rru_A3118: Rru_A3118 - Lipopolysaccharide biosynthesis (NCBI), at 3,595,958 to 3,597,556 _A3118 Position (kb) 3593 3594 3595Strain fitness (log2 ratio) -1 0 1 2at 3592.621 kb on + strand, within Rru_A3115at 3592.621 kb on + strand, within Rru_A3115at 3592.622 kb on - strand, within Rru_A3115at 3592.622 kb on - strand, within Rru_A3115at 3592.656 kb on + strand, within Rru_A3115at 3592.731 kb on + strand, within Rru_A3115at 3592.731 kb on + strand, within Rru_A3115at 3592.731 kb on + strand, within Rru_A3115at 3592.731 kb on + strand, within Rru_A3115at 3592.732 kb on - strand, within Rru_A3115at 3592.732 kb on - strand, within Rru_A3115at 3592.732 kb on - strand, within Rru_A3115at 3592.732 kb on - strand, within Rru_A3115at 3593.149 kb on + strand, within Rru_A3115at 3593.149 kb on + strand, within Rru_A3115at 3593.149 kb on + strand, within Rru_A3115at 3593.149 kb on + strand, within Rru_A3115at 3593.150 kb on - strand, within Rru_A3115at 3593.150 kb on - strand, within Rru_A3115at 3593.150 kb on - strand, within Rru_A3115at 3593.150 kb on - strand, within Rru_A3115at 3593.235 kb on + strandat 3593.235 kb on + strandat 3593.236 kb on - strandat 3593.236 kb on - strandat 3593.251 kb on + strandat 3593.252 kb on - strandat 3593.331 kb on + strandat 3593.332 kb on - strandat 3593.332 kb on - strandat 3593.469 kb on - strandat 3593.566 kb on + strand, within Rru_A3116at 3593.567 kb on - strand, within Rru_A3116at 3593.567 kb on - strand, within Rru_A3116at 3593.567 kb on - strand, within Rru_A3116at 3593.614 kb on + strand, within Rru_A3116at 3593.636 kb on + strand, within Rru_A3116at 3593.636 kb on + strand, within Rru_A3116at 3593.636 kb on + strand, within Rru_A3116at 3593.636 kb on + strand, within Rru_A3116at 3593.637 kb on - strand, within Rru_A3116at 3593.637 kb on - strand, within Rru_A3116at 3593.637 kb on - strand, within Rru_A3116at 3593.637 kb on - strand, within Rru_A3116at 3593.637 kb on - strand, within Rru_A3116at 3593.668 kb on + strand, within Rru_A3116at 3593.683 kb on + strand, within Rru_A3116at 3593.683 kb on + strand, within Rru_A3116at 3593.683 kb on + strand, within Rru_A3116at 3593.683 kb on + strand, within Rru_A3116at 3593.683 kb on + strand, within Rru_A3116at 3593.683 kb on + strand, within Rru_A3116at 3593.683 kb on + strand, within Rru_A3116at 3593.684 kb on - strand, within Rru_A3116at 3593.684 kb on - strand, within Rru_A3116at 3593.684 kb on - strand, within Rru_A3116at 3593.684 kb on - strand, within Rru_A3116at 3593.972 kb on - strand, within Rru_A3116at 3593.972 kb on - strand, within Rru_A3116at 3593.994 kb on + strand, within Rru_A3116at 3593.994 kb on + strand, within Rru_A3116at 3593.995 kb on - strand, within Rru_A3116at 3594.052 kb on + strand, within Rru_A3116at 3594.052 kb on + strand, within Rru_A3116at 3594.053 kb on - strand, within Rru_A3116at 3594.077 kb on - strand, within Rru_A3116at 3594.134 kb on - strand, within Rru_A3116at 3594.175 kb on + strand, within Rru_A3116at 3594.193 kb on + strand, within Rru_A3116at 3594.194 kb on - strand, within Rru_A3116at 3594.194 kb on - strand, within Rru_A3116at 3594.362 kb on - strand, within Rru_A3116at 3594.382 kb on + strand, within Rru_A3116at 3594.424 kb on + strand, within Rru_A3116at 3594.424 kb on + strand, within Rru_A3116at 3594.424 kb on + strand, within Rru_A3116at 3594.424 kb on + strand, within Rru_A3116at 3594.424 kb on + strand, within Rru_A3116at 3594.424 kb on + strand, within Rru_A3116at 3594.424 kb on + strand, within Rru_A3116at 3594.425 kb on - strand, within Rru_A3116at 3594.425 kb on - strand, within Rru_A3116at 3594.425 kb on - strand, within Rru_A3116at 3594.425 kb on - strand, within Rru_A3116at 3594.425 kb on - strand, within Rru_A3116at 3594.425 kb on - strand, within Rru_A3116at 3594.425 kb on - strand, within Rru_A3116at 3594.427 kb on + strand, within Rru_A3116at 3594.428 kb on - strand, within Rru_A3116at 3594.428 kb on - strand, within Rru_A3116at 3594.631 kb on + strand, within Rru_A3116at 3594.632 kb on - strand, within Rru_A3116at 3594.632 kb on - strand, within Rru_A3116at 3594.632 kb on - strand, within Rru_A3116at 3594.652 kb on + strand, within Rru_A3116at 3594.652 kb on + strand, within Rru_A3116at 3594.653 kb on - strand, within Rru_A3116at 3594.653 kb on - strand, within Rru_A3116at 3594.653 kb on - strand, within Rru_A3116at 3594.749 kb on + strand, within Rru_A3116at 3594.749 kb on + strand, within Rru_A3116at 3594.749 kb on + strand, within Rru_A3116at 3594.751 kb on + strand, within Rru_A3116at 3594.751 kb on + strand, within Rru_A3116at 3594.751 kb on + strand, within Rru_A3116at 3594.751 kb on + strand, within Rru_A3116at 3594.751 kb on + strand, within Rru_A3116at 3594.751 kb on + strand, within Rru_A3116at 3594.751 kb on + strand, within Rru_A3116at 3594.752 kb on - strand, within Rru_A3116at 3594.752 kb on - strand, within Rru_A3116at 3594.752 kb on - strand, within Rru_A3116at 3594.752 kb on - strand, within Rru_A3116at 3594.752 kb on - strand, within Rru_A3116at 3594.752 kb on - strand, within Rru_A3116at 3594.752 kb on - strand, within Rru_A3116at 3594.752 kb on - strand, within Rru_A3116at 3594.752 kb on - strand, within Rru_A3116at 3594.752 kb on - strand, within Rru_A3116at 3594.766 kb on + strand, within Rru_A3116at 3594.766 kb on + strand, within Rru_A3116at 3594.766 kb on + strand, within Rru_A3116at 3594.766 kb on + strand, within Rru_A3116at 3594.767 kb on - strand, within Rru_A3116at 3594.767 kb on - strand, within Rru_A3116at 3594.767 kb on - strand, within Rru_A3116at 3594.767 kb on - strand, within Rru_A3116at 3594.767 kb on - strand, within Rru_A3116at 3595.018 kb on + strandat 3595.019 kb on - strandat 3595.232 kb on - strand, within Rru_A3117at 3595.232 kb on - strand, within Rru_A3117at 3595.336 kb on + strand, within Rru_A3117at 3595.336 kb on + strand, within Rru_A3117at 3595.336 kb on + strand, within Rru_A3117at 3595.336 kb on + strand, within Rru_A3117at 3595.336 kb on + strand, within Rru_A3117at 3595.337 kb on - strand, within Rru_A3117at 3595.368 kb on + strand, within Rru_A3117at 3595.368 kb on + strand, within Rru_A3117at 3595.369 kb on - strand, within Rru_A3117at 3595.513 kb on + strand, within Rru_A3117at 3595.513 kb on + strand, within Rru_A3117at 3595.513 kb on + strand, within Rru_A3117at 3595.513 kb on + strand, within Rru_A3117at 3595.513 kb on + strand, within Rru_A3117at 3595.513 kb on + strand, within Rru_A3117at 3595.513 kb on + strand, within Rru_A3117at 3595.514 kb on - strand, within Rru_A3117at 3595.514 kb on - strand, within Rru_A3117at 3595.649 kb on + strandat 3595.711 kb on - strandat 3595.711 kb on - strandat 3595.738 kb on + strandat 3595.790 kb on - strandat 3595.791 kb on + strandat 3595.856 kb on + strandat 3595.886 kb on + strandat 3595.886 kb on + strandat 3595.886 kb on + strandat 3595.887 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 18 uM
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3,592,621 + Rru_A3115 0.30 -1.6
3,592,621 + Rru_A3115 0.30 -0.0
3,592,622 - Rru_A3115 0.30 -1.0
3,592,622 - Rru_A3115 0.30 -0.5
3,592,656 + Rru_A3115 0.34 +0.0
3,592,731 + Rru_A3115 0.41 +0.0
3,592,731 + Rru_A3115 0.41 +0.0
3,592,731 + Rru_A3115 0.41 -1.0
3,592,731 + Rru_A3115 0.41 +0.6
3,592,732 - Rru_A3115 0.41 -1.0
3,592,732 - Rru_A3115 0.41 +0.0
3,592,732 - Rru_A3115 0.41 +0.0
3,592,732 - Rru_A3115 0.41 +0.0
3,593,149 + Rru_A3115 0.82 +0.2
3,593,149 + Rru_A3115 0.82 +0.4
3,593,149 + Rru_A3115 0.82 +0.0
3,593,149 + Rru_A3115 0.82 +0.0
3,593,150 - Rru_A3115 0.82 +0.0
3,593,150 - Rru_A3115 0.82 +0.3
3,593,150 - Rru_A3115 0.82 +0.6
3,593,150 - Rru_A3115 0.82 +0.3
3,593,235 + -0.6
3,593,235 + -0.5
3,593,236 - -1.6
3,593,236 - +0.4
3,593,251 + +0.0
3,593,252 - -1.1
3,593,331 + +0.0
3,593,332 - +0.0
3,593,332 - +0.0
3,593,469 - -0.6
3,593,566 + Rru_A3116 0.13 -0.2
3,593,567 - Rru_A3116 0.13 +0.0
3,593,567 - Rru_A3116 0.13 -0.2
3,593,567 - Rru_A3116 0.13 -1.2
3,593,614 + Rru_A3116 0.16 +0.3
3,593,636 + Rru_A3116 0.18 +0.0
3,593,636 + Rru_A3116 0.18 +0.0
3,593,636 + Rru_A3116 0.18 +0.3
3,593,636 + Rru_A3116 0.18 -0.2
3,593,637 - Rru_A3116 0.18 -0.9
3,593,637 - Rru_A3116 0.18 -0.1
3,593,637 - Rru_A3116 0.18 +0.0
3,593,637 - Rru_A3116 0.18 +0.0
3,593,637 - Rru_A3116 0.18 -0.2
3,593,668 + Rru_A3116 0.20 +0.0
3,593,683 + Rru_A3116 0.20 -0.5
3,593,683 + Rru_A3116 0.20 +0.3
3,593,683 + Rru_A3116 0.20 -1.2
3,593,683 + Rru_A3116 0.20 +0.5
3,593,683 + Rru_A3116 0.20 -1.0
3,593,683 + Rru_A3116 0.20 -1.0
3,593,683 + Rru_A3116 0.20 -1.6
3,593,684 - Rru_A3116 0.21 -0.8
3,593,684 - Rru_A3116 0.21 -0.6
3,593,684 - Rru_A3116 0.21 +0.0
3,593,684 - Rru_A3116 0.21 -1.7
3,593,972 - Rru_A3116 0.38 -1.0
3,593,972 - Rru_A3116 0.38 +0.0
3,593,994 + Rru_A3116 0.40 +0.0
3,593,994 + Rru_A3116 0.40 +0.4
3,593,995 - Rru_A3116 0.40 -0.3
3,594,052 + Rru_A3116 0.43 -0.4
3,594,052 + Rru_A3116 0.43 +0.0
3,594,053 - Rru_A3116 0.43 +0.6
3,594,077 - Rru_A3116 0.45 -1.1
3,594,134 - Rru_A3116 0.48 -0.2
3,594,175 + Rru_A3116 0.51 +0.0
3,594,193 + Rru_A3116 0.52 +0.3
3,594,194 - Rru_A3116 0.52 +0.0
3,594,194 - Rru_A3116 0.52 +0.0
3,594,362 - Rru_A3116 0.62 +0.0
3,594,382 + Rru_A3116 0.63 +0.1
3,594,424 + Rru_A3116 0.66 +0.1
3,594,424 + Rru_A3116 0.66 +0.0
3,594,424 + Rru_A3116 0.66 +0.0
3,594,424 + Rru_A3116 0.66 +0.0
3,594,424 + Rru_A3116 0.66 +0.0
3,594,424 + Rru_A3116 0.66 +0.1
3,594,424 + Rru_A3116 0.66 +0.4
3,594,425 - Rru_A3116 0.66 -0.0
3,594,425 - Rru_A3116 0.66 -1.6
3,594,425 - Rru_A3116 0.66 +0.2
3,594,425 - Rru_A3116 0.66 +0.0
3,594,425 - Rru_A3116 0.66 +0.0
3,594,425 - Rru_A3116 0.66 +0.0
3,594,425 - Rru_A3116 0.66 +0.0
3,594,427 + Rru_A3116 0.66 +0.0
3,594,428 - Rru_A3116 0.66 -1.0
3,594,428 - Rru_A3116 0.66 +0.0
3,594,631 + Rru_A3116 0.79 +0.3
3,594,632 - Rru_A3116 0.79 +0.0
3,594,632 - Rru_A3116 0.79 +0.3
3,594,632 - Rru_A3116 0.79 +0.0
3,594,652 + Rru_A3116 0.80 +0.8
3,594,652 + Rru_A3116 0.80 +1.5
3,594,653 - Rru_A3116 0.80 +0.2
3,594,653 - Rru_A3116 0.80 +0.0
3,594,653 - Rru_A3116 0.80 +1.2
3,594,749 + Rru_A3116 0.86 +0.8
3,594,749 + Rru_A3116 0.86 +0.4
3,594,749 + Rru_A3116 0.86 +1.3
3,594,751 + Rru_A3116 0.86 +0.7
3,594,751 + Rru_A3116 0.86 +0.6
3,594,751 + Rru_A3116 0.86 +0.0
3,594,751 + Rru_A3116 0.86 +0.0
3,594,751 + Rru_A3116 0.86 +0.8
3,594,751 + Rru_A3116 0.86 +0.0
3,594,751 + Rru_A3116 0.86 +1.3
3,594,752 - Rru_A3116 0.86 +1.6
3,594,752 - Rru_A3116 0.86 -1.6
3,594,752 - Rru_A3116 0.86 -0.7
3,594,752 - Rru_A3116 0.86 +0.7
3,594,752 - Rru_A3116 0.86 +0.0
3,594,752 - Rru_A3116 0.86 +0.1
3,594,752 - Rru_A3116 0.86 +0.1
3,594,752 - Rru_A3116 0.86 +0.0
3,594,752 - Rru_A3116 0.86 -0.4
3,594,752 - Rru_A3116 0.86 +0.0
3,594,766 + Rru_A3116 0.87 +1.9
3,594,766 + Rru_A3116 0.87 +0.5
3,594,766 + Rru_A3116 0.87 +0.2
3,594,766 + Rru_A3116 0.87 +0.0
3,594,767 - Rru_A3116 0.87 +0.0
3,594,767 - Rru_A3116 0.87 +0.0
3,594,767 - Rru_A3116 0.87 +0.8
3,594,767 - Rru_A3116 0.87 +0.6
3,594,767 - Rru_A3116 0.87 +0.9
3,595,018 + +0.0
3,595,019 - +0.0
3,595,232 - Rru_A3117 0.34 -0.1
3,595,232 - Rru_A3117 0.34 +0.8
3,595,336 + Rru_A3117 0.51 -1.0
3,595,336 + Rru_A3117 0.51 +0.5
3,595,336 + Rru_A3117 0.51 -1.2
3,595,336 + Rru_A3117 0.51 +0.0
3,595,336 + Rru_A3117 0.51 -1.0
3,595,337 - Rru_A3117 0.51 +0.0
3,595,368 + Rru_A3117 0.56 -0.3
3,595,368 + Rru_A3117 0.56 +0.0
3,595,369 - Rru_A3117 0.56 +0.4
3,595,513 + Rru_A3117 0.79 +0.0
3,595,513 + Rru_A3117 0.79 +0.0
3,595,513 + Rru_A3117 0.79 +0.2
3,595,513 + Rru_A3117 0.79 -0.5
3,595,513 + Rru_A3117 0.79 -0.4
3,595,513 + Rru_A3117 0.79 +0.0
3,595,513 + Rru_A3117 0.79 -0.1
3,595,514 - Rru_A3117 0.79 +0.0
3,595,514 - Rru_A3117 0.79 -1.0
3,595,649 + +0.6
3,595,711 - -1.6
3,595,711 - +0.0
3,595,738 + -0.1
3,595,790 - +0.0
3,595,791 + +0.5
3,595,856 + +0.9
3,595,886 + +0.6
3,595,886 + -1.0
3,595,886 + +0.7
3,595,887 - +0.0

Or see this region's nucleotide sequence