Experiment: acetate; Light intensity 18 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2981 and Rru_A2982 are separated by 69 nucleotides Rru_A2982 and Rru_A2983 are separated by 181 nucleotides
Rru_A2981: Rru_A2981 - 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide (NCBI), at 3,432,473 to 3,433,426
_A2981
Rru_A2982: Rru_A2982 - O-methyltransferase, family 2 (NCBI), at 3,433,496 to 3,434,686
_A2982
Rru_A2983: Rru_A2983 - Polyprenyl synthetase (NCBI), at 3,434,868 to 3,435,737
_A2983
Position (kb)
3433
3434
3435 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3432.717 kb on + strand, within Rru_A2981 at 3432.717 kb on + strand, within Rru_A2981 at 3432.717 kb on + strand, within Rru_A2981 at 3432.717 kb on + strand, within Rru_A2981 at 3432.717 kb on + strand, within Rru_A2981 at 3432.718 kb on - strand, within Rru_A2981 at 3432.718 kb on - strand, within Rru_A2981 at 3432.718 kb on - strand, within Rru_A2981 at 3432.770 kb on - strand, within Rru_A2981 at 3432.770 kb on - strand, within Rru_A2981 at 3432.813 kb on + strand, within Rru_A2981 at 3432.820 kb on + strand, within Rru_A2981 at 3432.884 kb on - strand, within Rru_A2981 at 3432.884 kb on - strand, within Rru_A2981 at 3432.884 kb on - strand, within Rru_A2981 at 3433.234 kb on - strand, within Rru_A2981 at 3433.427 kb on - strand at 3433.497 kb on + strand at 3433.616 kb on + strand, within Rru_A2982 at 3433.616 kb on + strand, within Rru_A2982 at 3433.698 kb on + strand, within Rru_A2982 at 3433.699 kb on - strand, within Rru_A2982 at 3433.710 kb on + strand, within Rru_A2982 at 3433.711 kb on - strand, within Rru_A2982 at 3434.193 kb on + strand, within Rru_A2982 at 3434.193 kb on + strand, within Rru_A2982 at 3434.193 kb on + strand, within Rru_A2982 at 3434.193 kb on + strand, within Rru_A2982 at 3434.268 kb on + strand, within Rru_A2982 at 3434.521 kb on - strand, within Rru_A2982 at 3434.604 kb on + strand at 3434.604 kb on + strand at 3434.605 kb on - strand at 3434.925 kb on - strand at 3435.128 kb on - strand, within Rru_A2983 at 3435.436 kb on + strand, within Rru_A2983
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 18 uM remove 3,432,717 + Rru_A2981 0.26 -3.6 3,432,717 + Rru_A2981 0.26 +0.0 3,432,717 + Rru_A2981 0.26 +0.0 3,432,717 + Rru_A2981 0.26 +0.0 3,432,717 + Rru_A2981 0.26 -1.0 3,432,718 - Rru_A2981 0.26 -3.7 3,432,718 - Rru_A2981 0.26 -1.2 3,432,718 - Rru_A2981 0.26 -1.6 3,432,770 - Rru_A2981 0.31 +0.0 3,432,770 - Rru_A2981 0.31 +0.0 3,432,813 + Rru_A2981 0.36 +0.0 3,432,820 + Rru_A2981 0.36 -4.3 3,432,884 - Rru_A2981 0.43 +0.0 3,432,884 - Rru_A2981 0.43 +0.0 3,432,884 - Rru_A2981 0.43 +0.0 3,433,234 - Rru_A2981 0.80 +0.0 3,433,427 - +0.0 3,433,497 + -2.6 3,433,616 + Rru_A2982 0.10 -1.4 3,433,616 + Rru_A2982 0.10 +0.0 3,433,698 + Rru_A2982 0.17 -2.9 3,433,699 - Rru_A2982 0.17 -1.0 3,433,710 + Rru_A2982 0.18 -1.0 3,433,711 - Rru_A2982 0.18 +0.0 3,434,193 + Rru_A2982 0.59 -1.0 3,434,193 + Rru_A2982 0.59 +0.0 3,434,193 + Rru_A2982 0.59 -2.2 3,434,193 + Rru_A2982 0.59 +0.0 3,434,268 + Rru_A2982 0.65 -1.9 3,434,521 - Rru_A2982 0.86 -3.0 3,434,604 + -2.4 3,434,604 + -2.5 3,434,605 - -3.3 3,434,925 - +0.0 3,435,128 - Rru_A2983 0.30 +0.0 3,435,436 + Rru_A2983 0.65 -1.0
Or see this region's nucleotide sequence