Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2802

Experiment: acetate; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2800 and Rru_A2801 are separated by 74 nucleotidesRru_A2801 and Rru_A2802 are separated by 196 nucleotidesRru_A2802 and Rru_A2803 overlap by 4 nucleotidesRru_A2803 and Rru_A2804 overlap by 20 nucleotides Rru_A2800: Rru_A2800 - hypothetical protein (NCBI), at 3,233,551 to 3,234,003 _A2800 Rru_A2801: Rru_A2801 - thiol-disulfide interchange protein (NCBI), at 3,234,078 to 3,234,539 _A2801 Rru_A2802: Rru_A2802 - Cytochrome c, class I (NCBI), at 3,234,736 to 3,234,984 _A2802 Rru_A2803: Rru_A2803 - putative thioredoxin (NCBI), at 3,234,981 to 3,235,499 _A2803 Rru_A2804: Rru_A2804 - ABC transporter component (NCBI), at 3,235,480 to 3,236,211 _A2804 Position (kb) 3234 3235Strain fitness (log2 ratio) -1 0 1at 3233.774 kb on - strand, within Rru_A2800at 3233.774 kb on - strand, within Rru_A2800at 3233.904 kb on + strand, within Rru_A2800at 3233.908 kb on + strand, within Rru_A2800at 3233.909 kb on - strand, within Rru_A2800at 3233.909 kb on - strand, within Rru_A2800at 3234.079 kb on + strandat 3234.079 kb on + strandat 3234.080 kb on - strandat 3234.080 kb on - strandat 3234.080 kb on - strandat 3234.080 kb on - strandat 3234.587 kb on + strandat 3234.587 kb on + strandat 3234.587 kb on + strandat 3234.587 kb on + strandat 3234.588 kb on - strandat 3235.099 kb on + strand, within Rru_A2803at 3235.100 kb on - strand, within Rru_A2803at 3235.100 kb on - strand, within Rru_A2803at 3235.100 kb on - strand, within Rru_A2803at 3235.482 kb on - strandat 3235.805 kb on + strand, within Rru_A2804at 3235.805 kb on + strand, within Rru_A2804at 3235.806 kb on - strand, within Rru_A2804at 3235.845 kb on - strand, within Rru_A2804at 3235.949 kb on + strand, within Rru_A2804

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 18 uM
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3,233,774 - Rru_A2800 0.49 +0.0
3,233,774 - Rru_A2800 0.49 -0.1
3,233,904 + Rru_A2800 0.78 +0.0
3,233,908 + Rru_A2800 0.79 +0.6
3,233,909 - Rru_A2800 0.79 -1.6
3,233,909 - Rru_A2800 0.79 +1.4
3,234,079 + +0.4
3,234,079 + +0.0
3,234,080 - +0.0
3,234,080 - +1.2
3,234,080 - +1.0
3,234,080 - +1.5
3,234,587 + -0.8
3,234,587 + +0.0
3,234,587 + -0.1
3,234,587 + -0.5
3,234,588 - +1.3
3,235,099 + Rru_A2803 0.23 -0.9
3,235,100 - Rru_A2803 0.23 +0.4
3,235,100 - Rru_A2803 0.23 +0.0
3,235,100 - Rru_A2803 0.23 +1.4
3,235,482 - +0.0
3,235,805 + Rru_A2804 0.44 +0.0
3,235,805 + Rru_A2804 0.44 -0.6
3,235,806 - Rru_A2804 0.45 +0.0
3,235,845 - Rru_A2804 0.50 -0.8
3,235,949 + Rru_A2804 0.64 +0.0

Or see this region's nucleotide sequence