Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2117

Experiment: acetate; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2116 and Rru_A2117 are separated by 57 nucleotidesRru_A2117 and Rru_A2118 are separated by 219 nucleotides Rru_A2116: Rru_A2116 - UDP-glucose 6-dehydrogenase (NCBI), at 2,456,149 to 2,457,465 _A2116 Rru_A2117: Rru_A2117 - UTP--glucose-1-phosphate uridylyltransferase (NCBI), at 2,457,523 to 2,458,401 _A2117 Rru_A2118: Rru_A2118 - ATPase (NCBI), at 2,458,621 to 2,459,448 _A2118 Position (kb) 2457 2458 2459Strain fitness (log2 ratio) -1 0 1at 2458.428 kb on - strandat 2458.622 kb on + strandat 2458.624 kb on + strandat 2458.624 kb on + strandat 2458.638 kb on + strandat 2458.638 kb on + strandat 2458.770 kb on - strand, within Rru_A2118at 2458.774 kb on - strand, within Rru_A2118at 2458.774 kb on - strand, within Rru_A2118at 2458.986 kb on + strand, within Rru_A2118at 2458.986 kb on + strand, within Rru_A2118at 2458.986 kb on + strand, within Rru_A2118at 2458.986 kb on + strand, within Rru_A2118at 2458.987 kb on - strand, within Rru_A2118at 2458.987 kb on - strand, within Rru_A2118at 2458.987 kb on - strand, within Rru_A2118at 2458.987 kb on - strand, within Rru_A2118at 2458.989 kb on + strand, within Rru_A2118at 2459.083 kb on - strand, within Rru_A2118at 2459.268 kb on - strand, within Rru_A2118at 2459.268 kb on - strand, within Rru_A2118at 2459.268 kb on - strand, within Rru_A2118

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 18 uM
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2,458,428 - +0.0
2,458,622 + +0.0
2,458,624 + +0.0
2,458,624 + +0.0
2,458,638 + +0.0
2,458,638 + +0.8
2,458,770 - Rru_A2118 0.18 +0.0
2,458,774 - Rru_A2118 0.18 -0.7
2,458,774 - Rru_A2118 0.18 +0.0
2,458,986 + Rru_A2118 0.44 -0.8
2,458,986 + Rru_A2118 0.44 +0.0
2,458,986 + Rru_A2118 0.44 -0.5
2,458,986 + Rru_A2118 0.44 -0.4
2,458,987 - Rru_A2118 0.44 +0.1
2,458,987 - Rru_A2118 0.44 +0.8
2,458,987 - Rru_A2118 0.44 -0.5
2,458,987 - Rru_A2118 0.44 -1.3
2,458,989 + Rru_A2118 0.44 +0.0
2,459,083 - Rru_A2118 0.56 +0.0
2,459,268 - Rru_A2118 0.78 +0.0
2,459,268 - Rru_A2118 0.78 -1.3
2,459,268 - Rru_A2118 0.78 +0.0

Or see this region's nucleotide sequence