Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2057

Experiment: acetate; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2055 and Rru_A2056 are separated by 104 nucleotidesRru_A2056 and Rru_A2057 are separated by 25 nucleotidesRru_A2057 and Rru_A2058 are separated by 106 nucleotides Rru_A2055: Rru_A2055 - Peptidase S49 (NCBI), at 2,377,508 to 2,378,302 _A2055 Rru_A2056: Rru_A2056 - Carbonate dehydratase (NCBI), at 2,378,407 to 2,379,048 _A2056 Rru_A2057: Rru_A2057 - Molybdopterin-guanine dinucleotide biosynthesis MobB region (NCBI), at 2,379,074 to 2,379,592 _A2057 Rru_A2058: Rru_A2058 - Histidine Kinase (NCBI), at 2,379,699 to 2,381,198 _A2058 Position (kb) 2379 2380Strain fitness (log2 ratio) -2 -1 0 1at 2378.151 kb on - strand, within Rru_A2055at 2378.169 kb on + strand, within Rru_A2055at 2378.365 kb on + strandat 2379.046 kb on + strandat 2379.178 kb on + strand, within Rru_A2057at 2379.626 kb on - strandat 2379.774 kb on + strandat 2379.812 kb on - strandat 2379.819 kb on + strandat 2379.819 kb on + strandat 2379.875 kb on + strand, within Rru_A2058at 2379.876 kb on - strand, within Rru_A2058at 2379.919 kb on - strand, within Rru_A2058at 2380.083 kb on + strand, within Rru_A2058at 2380.083 kb on + strand, within Rru_A2058at 2380.083 kb on + strand, within Rru_A2058at 2380.084 kb on - strand, within Rru_A2058at 2380.126 kb on - strand, within Rru_A2058at 2380.126 kb on - strand, within Rru_A2058at 2380.412 kb on + strand, within Rru_A2058at 2380.412 kb on + strand, within Rru_A2058at 2380.412 kb on + strand, within Rru_A2058at 2380.413 kb on - strand, within Rru_A2058at 2380.413 kb on - strand, within Rru_A2058at 2380.413 kb on - strand, within Rru_A2058at 2380.584 kb on + strand, within Rru_A2058at 2380.584 kb on + strand, within Rru_A2058at 2380.584 kb on + strand, within Rru_A2058at 2380.584 kb on + strand, within Rru_A2058at 2380.584 kb on + strand, within Rru_A2058at 2380.584 kb on + strand, within Rru_A2058at 2380.584 kb on + strand, within Rru_A2058at 2380.585 kb on - strand, within Rru_A2058at 2380.585 kb on - strand, within Rru_A2058at 2380.585 kb on - strand, within Rru_A2058at 2380.585 kb on - strand, within Rru_A2058at 2380.585 kb on - strand, within Rru_A2058at 2380.585 kb on - strand, within Rru_A2058at 2380.585 kb on - strand, within Rru_A2058

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 18 uM
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2,378,151 - Rru_A2055 0.81 -0.0
2,378,169 + Rru_A2055 0.83 -0.5
2,378,365 + -0.0
2,379,046 + -0.0
2,379,178 + Rru_A2057 0.20 -0.0
2,379,626 - -0.0
2,379,774 + -0.0
2,379,812 - -0.2
2,379,819 + -0.0
2,379,819 + -0.3
2,379,875 + Rru_A2058 0.12 -1.0
2,379,876 - Rru_A2058 0.12 -0.0
2,379,919 - Rru_A2058 0.15 -0.0
2,380,083 + Rru_A2058 0.26 -1.0
2,380,083 + Rru_A2058 0.26 -0.2
2,380,083 + Rru_A2058 0.26 -0.5
2,380,084 - Rru_A2058 0.26 -0.0
2,380,126 - Rru_A2058 0.28 -2.0
2,380,126 - Rru_A2058 0.28 -0.0
2,380,412 + Rru_A2058 0.48 -0.0
2,380,412 + Rru_A2058 0.48 -1.0
2,380,412 + Rru_A2058 0.48 -1.0
2,380,413 - Rru_A2058 0.48 +0.2
2,380,413 - Rru_A2058 0.48 -0.0
2,380,413 - Rru_A2058 0.48 -0.0
2,380,584 + Rru_A2058 0.59 +0.4
2,380,584 + Rru_A2058 0.59 +0.1
2,380,584 + Rru_A2058 0.59 +1.6
2,380,584 + Rru_A2058 0.59 -0.0
2,380,584 + Rru_A2058 0.59 -0.0
2,380,584 + Rru_A2058 0.59 -1.0
2,380,584 + Rru_A2058 0.59 +0.1
2,380,585 - Rru_A2058 0.59 -0.5
2,380,585 - Rru_A2058 0.59 +0.2
2,380,585 - Rru_A2058 0.59 -0.0
2,380,585 - Rru_A2058 0.59 -0.0
2,380,585 - Rru_A2058 0.59 -0.0
2,380,585 - Rru_A2058 0.59 -0.6
2,380,585 - Rru_A2058 0.59 -0.0

Or see this region's nucleotide sequence