Experiment: acetate; Light intensity 18 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1757 and Rru_A1758 are separated by 328 nucleotides Rru_A1758 and Rru_A1759 are separated by 210 nucleotides
Rru_A1757: Rru_A1757 - Gid protein (NCBI), at 2,050,135 to 2,051,583
_A1757
Rru_A1758: Rru_A1758 - hypothetical protein (NCBI), at 2,051,912 to 2,052,130
_A1758
Rru_A1759: Rru_A1759 - putative phytoene synthase protein (NCBI), at 2,052,341 to 2,053,189
_A1759
Position (kb)
2051
2052
2053 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2050.978 kb on + strand, within Rru_A1757 at 2050.979 kb on - strand, within Rru_A1757 at 2050.979 kb on - strand, within Rru_A1757 at 2050.979 kb on - strand, within Rru_A1757 at 2050.979 kb on - strand, within Rru_A1757 at 2051.094 kb on + strand, within Rru_A1757 at 2051.094 kb on + strand, within Rru_A1757 at 2051.094 kb on + strand, within Rru_A1757 at 2051.094 kb on + strand, within Rru_A1757 at 2051.095 kb on - strand, within Rru_A1757 at 2051.095 kb on - strand, within Rru_A1757 at 2051.095 kb on - strand, within Rru_A1757 at 2051.191 kb on + strand, within Rru_A1757 at 2051.191 kb on + strand, within Rru_A1757 at 2051.191 kb on + strand, within Rru_A1757 at 2051.192 kb on - strand, within Rru_A1757 at 2051.192 kb on - strand, within Rru_A1757 at 2051.192 kb on - strand, within Rru_A1757 at 2051.310 kb on + strand, within Rru_A1757 at 2051.311 kb on - strand, within Rru_A1757 at 2051.658 kb on + strand at 2051.782 kb on + strand at 2051.783 kb on - strand at 2051.783 kb on - strand at 2051.783 kb on - strand at 2051.868 kb on - strand at 2051.891 kb on + strand at 2051.891 kb on + strand at 2051.891 kb on + strand at 2051.891 kb on + strand at 2051.891 kb on + strand at 2051.891 kb on + strand at 2051.891 kb on + strand at 2051.892 kb on - strand at 2051.892 kb on - strand at 2052.082 kb on + strand, within Rru_A1758 at 2052.098 kb on - strand, within Rru_A1758 at 2052.098 kb on - strand, within Rru_A1758 at 2052.222 kb on - strand at 2052.279 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 18 uM remove 2,050,978 + Rru_A1757 0.58 +0.0 2,050,979 - Rru_A1757 0.58 -1.8 2,050,979 - Rru_A1757 0.58 -0.9 2,050,979 - Rru_A1757 0.58 +0.0 2,050,979 - Rru_A1757 0.58 -1.0 2,051,094 + Rru_A1757 0.66 +0.0 2,051,094 + Rru_A1757 0.66 -2.0 2,051,094 + Rru_A1757 0.66 -2.5 2,051,094 + Rru_A1757 0.66 -1.2 2,051,095 - Rru_A1757 0.66 +0.0 2,051,095 - Rru_A1757 0.66 -0.6 2,051,095 - Rru_A1757 0.66 -0.4 2,051,191 + Rru_A1757 0.73 -0.2 2,051,191 + Rru_A1757 0.73 +0.0 2,051,191 + Rru_A1757 0.73 -2.0 2,051,192 - Rru_A1757 0.73 -0.6 2,051,192 - Rru_A1757 0.73 -2.3 2,051,192 - Rru_A1757 0.73 -0.7 2,051,310 + Rru_A1757 0.81 +1.3 2,051,311 - Rru_A1757 0.81 +0.0 2,051,658 + +0.0 2,051,782 + +0.0 2,051,783 - -2.0 2,051,783 - +0.0 2,051,783 - +2.5 2,051,868 - +1.4 2,051,891 + -0.1 2,051,891 + +0.6 2,051,891 + +0.0 2,051,891 + -0.1 2,051,891 + -1.0 2,051,891 + -0.9 2,051,891 + +0.0 2,051,892 - +1.3 2,051,892 - +1.4 2,052,082 + Rru_A1758 0.78 +0.7 2,052,098 - Rru_A1758 0.85 +0.0 2,052,098 - Rru_A1758 0.85 +0.7 2,052,222 - +0.0 2,052,279 + +0.0
Or see this region's nucleotide sequence