Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1698

Experiment: acetate; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1696 and Rru_A1697 are separated by 86 nucleotidesRru_A1697 and Rru_A1698 are separated by 111 nucleotidesRru_A1698 and Rru_A1699 are separated by 17 nucleotidesRru_A1699 and Rru_A1700 are separated by 0 nucleotides Rru_A1696: Rru_A1696 - permease (NCBI), at 1,987,054 to 1,987,596 _A1696 Rru_A1697: Rru_A1697 - hypothetical protein (NCBI), at 1,987,683 to 1,988,042 _A1697 Rru_A1698: Rru_A1698 - Cation efflux protein (NCBI), at 1,988,154 to 1,989,167 _A1698 Rru_A1699: Rru_A1699 - Beta-lactamase-like (NCBI), at 1,989,185 to 1,989,988 _A1699 Rru_A1700: Rru_A1700 - TatD-related deoxyribonuclease (NCBI), at 1,989,989 to 1,990,801 _A1700 Position (kb) 1988 1989 1990Strain fitness (log2 ratio) -1 0 1 2at 1987.177 kb on - strand, within Rru_A1696at 1987.307 kb on + strand, within Rru_A1696at 1987.307 kb on + strand, within Rru_A1696at 1987.307 kb on + strand, within Rru_A1696at 1987.389 kb on - strand, within Rru_A1696at 1987.389 kb on - strand, within Rru_A1696at 1987.409 kb on + strand, within Rru_A1696at 1987.475 kb on + strand, within Rru_A1696at 1987.475 kb on + strand, within Rru_A1696at 1987.580 kb on + strandat 1987.580 kb on + strandat 1987.580 kb on + strandat 1987.580 kb on + strandat 1987.581 kb on - strandat 1987.581 kb on - strandat 1987.581 kb on - strandat 1987.662 kb on - strandat 1988.055 kb on + strandat 1988.104 kb on + strandat 1988.104 kb on + strandat 1988.104 kb on + strandat 1988.107 kb on + strandat 1988.107 kb on + strandat 1988.107 kb on + strandat 1988.107 kb on + strandat 1988.107 kb on + strandat 1988.108 kb on - strandat 1988.108 kb on - strandat 1988.108 kb on - strandat 1988.108 kb on - strandat 1988.159 kb on + strandat 1988.160 kb on - strandat 1988.160 kb on - strandat 1988.196 kb on + strandat 1988.197 kb on - strandat 1988.374 kb on - strand, within Rru_A1698at 1988.709 kb on + strand, within Rru_A1698at 1988.709 kb on + strand, within Rru_A1698at 1988.710 kb on - strand, within Rru_A1698at 1988.775 kb on + strand, within Rru_A1698at 1988.775 kb on + strand, within Rru_A1698at 1988.775 kb on + strand, within Rru_A1698at 1988.775 kb on + strand, within Rru_A1698at 1988.775 kb on + strand, within Rru_A1698at 1988.775 kb on + strand, within Rru_A1698at 1988.776 kb on - strand, within Rru_A1698at 1988.776 kb on - strand, within Rru_A1698at 1988.776 kb on - strand, within Rru_A1698at 1988.776 kb on - strand, within Rru_A1698at 1988.777 kb on + strand, within Rru_A1698at 1988.777 kb on + strand, within Rru_A1698at 1988.778 kb on - strand, within Rru_A1698at 1988.778 kb on - strand, within Rru_A1698at 1988.778 kb on - strand, within Rru_A1698at 1989.045 kb on + strand, within Rru_A1698at 1989.163 kb on + strandat 1989.459 kb on + strand, within Rru_A1699at 1989.460 kb on - strand, within Rru_A1699at 1989.588 kb on + strand, within Rru_A1699at 1989.588 kb on + strand, within Rru_A1699at 1989.589 kb on - strand, within Rru_A1699at 1989.628 kb on - strand, within Rru_A1699at 1989.734 kb on - strand, within Rru_A1699at 1989.734 kb on - strand, within Rru_A1699at 1989.734 kb on - strand, within Rru_A1699at 1989.991 kb on - strandat 1990.126 kb on + strand, within Rru_A1700at 1990.165 kb on + strand, within Rru_A1700at 1990.165 kb on + strand, within Rru_A1700

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 18 uM
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1,987,177 - Rru_A1696 0.23 +0.0
1,987,307 + Rru_A1696 0.47 -0.3
1,987,307 + Rru_A1696 0.47 +0.0
1,987,307 + Rru_A1696 0.47 -0.2
1,987,389 - Rru_A1696 0.62 +0.2
1,987,389 - Rru_A1696 0.62 -0.2
1,987,409 + Rru_A1696 0.65 +0.0
1,987,475 + Rru_A1696 0.78 +0.2
1,987,475 + Rru_A1696 0.78 +1.3
1,987,580 + +0.0
1,987,580 + +0.0
1,987,580 + +0.6
1,987,580 + +0.0
1,987,581 - +0.0
1,987,581 - +0.1
1,987,581 - -0.5
1,987,662 - +2.4
1,988,055 + -0.5
1,988,104 + -0.7
1,988,104 + +0.1
1,988,104 + +0.1
1,988,107 + -0.3
1,988,107 + +0.9
1,988,107 + +2.3
1,988,107 + -0.1
1,988,107 + +0.1
1,988,108 - +0.1
1,988,108 - +1.3
1,988,108 - +0.3
1,988,108 - +2.4
1,988,159 + +0.1
1,988,160 - +0.8
1,988,160 - +0.1
1,988,196 + +0.1
1,988,197 - +0.4
1,988,374 - Rru_A1698 0.22 +0.4
1,988,709 + Rru_A1698 0.55 +0.1
1,988,709 + Rru_A1698 0.55 +0.1
1,988,710 - Rru_A1698 0.55 +1.3
1,988,775 + Rru_A1698 0.61 +0.1
1,988,775 + Rru_A1698 0.61 +0.1
1,988,775 + Rru_A1698 0.61 +1.3
1,988,775 + Rru_A1698 0.61 +0.1
1,988,775 + Rru_A1698 0.61 +0.1
1,988,775 + Rru_A1698 0.61 +0.1
1,988,776 - Rru_A1698 0.61 -0.2
1,988,776 - Rru_A1698 0.61 +0.1
1,988,776 - Rru_A1698 0.61 +0.1
1,988,776 - Rru_A1698 0.61 +0.1
1,988,777 + Rru_A1698 0.61 +0.1
1,988,777 + Rru_A1698 0.61 +0.1
1,988,778 - Rru_A1698 0.62 +0.1
1,988,778 - Rru_A1698 0.62 -0.4
1,988,778 - Rru_A1698 0.62 +0.0
1,989,045 + Rru_A1698 0.88 +0.2
1,989,163 + -0.4
1,989,459 + Rru_A1699 0.34 -0.9
1,989,460 - Rru_A1699 0.34 +0.1
1,989,588 + Rru_A1699 0.50 -0.4
1,989,588 + Rru_A1699 0.50 -0.4
1,989,589 - Rru_A1699 0.50 +0.1
1,989,628 - Rru_A1699 0.55 +0.1
1,989,734 - Rru_A1699 0.68 +0.2
1,989,734 - Rru_A1699 0.68 -0.3
1,989,734 - Rru_A1699 0.68 -0.9
1,989,991 - +1.2
1,990,126 + Rru_A1700 0.17 +0.9
1,990,165 + Rru_A1700 0.22 +0.0
1,990,165 + Rru_A1700 0.22 +1.0

Or see this region's nucleotide sequence