Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1500

Experiment: acetate; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1498 and Rru_A1499 overlap by 4 nucleotidesRru_A1499 and Rru_A1500 are separated by 430 nucleotidesRru_A1500 and Rru_A1501 are separated by 532 nucleotidesRru_A1501 and Rru_A1502 are separated by 74 nucleotides Rru_A1498: Rru_A1498 - hypothetical protein (NCBI), at 1,769,785 to 1,770,048 _A1498 Rru_A1499: Rru_A1499 - Ferritin and Dps (NCBI), at 1,770,045 to 1,770,608 _A1499 Rru_A1500: Rru_A1500 - Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity (NCBI), at 1,771,039 to 1,775,490 _A1500 Rru_A1501: Rru_A1501 - Transport-associated (NCBI), at 1,776,023 to 1,776,337 _A1501 Rru_A1502: Rru_A1502 - hypothetical protein (NCBI), at 1,776,412 to 1,776,654 _A1502 Position (kb) 1771 1772 1773 1774 1775 1776Strain fitness (log2 ratio) -2 -1 0 1 2at 1770.143 kb on + strand, within Rru_A1499at 1770.591 kb on - strandat 1770.591 kb on - strandat 1770.622 kb on + strandat 1770.622 kb on + strandat 1770.622 kb on + strandat 1770.623 kb on - strandat 1770.825 kb on + strandat 1770.825 kb on + strandat 1770.825 kb on + strandat 1770.825 kb on + strandat 1770.825 kb on + strandat 1770.826 kb on - strandat 1770.827 kb on + strandat 1770.828 kb on - strandat 1770.869 kb on - strandat 1770.978 kb on - strandat 1771.023 kb on + strandat 1771.024 kb on - strandat 1771.366 kb on + strandat 1771.366 kb on + strandat 1771.366 kb on + strandat 1771.367 kb on - strandat 1771.367 kb on - strandat 1771.367 kb on - strandat 1771.367 kb on - strandat 1771.367 kb on - strandat 1771.367 kb on - strandat 1771.489 kb on + strand, within Rru_A1500at 1771.491 kb on + strand, within Rru_A1500at 1771.492 kb on - strand, within Rru_A1500at 1771.492 kb on - strand, within Rru_A1500at 1771.503 kb on + strand, within Rru_A1500at 1771.504 kb on - strand, within Rru_A1500at 1771.813 kb on + strand, within Rru_A1500at 1771.813 kb on + strand, within Rru_A1500at 1771.813 kb on + strand, within Rru_A1500at 1771.829 kb on - strand, within Rru_A1500at 1771.829 kb on - strand, within Rru_A1500at 1771.829 kb on - strand, within Rru_A1500at 1772.089 kb on - strand, within Rru_A1500at 1772.089 kb on - strand, within Rru_A1500at 1772.089 kb on - strand, within Rru_A1500at 1772.107 kb on + strand, within Rru_A1500at 1772.108 kb on - strand, within Rru_A1500at 1772.108 kb on - strand, within Rru_A1500at 1772.108 kb on - strand, within Rru_A1500at 1772.120 kb on + strand, within Rru_A1500at 1772.120 kb on + strand, within Rru_A1500at 1772.121 kb on - strand, within Rru_A1500at 1772.121 kb on - strand, within Rru_A1500at 1772.121 kb on - strand, within Rru_A1500at 1772.183 kb on - strand, within Rru_A1500at 1772.301 kb on + strand, within Rru_A1500at 1772.301 kb on + strand, within Rru_A1500at 1772.302 kb on - strand, within Rru_A1500at 1772.302 kb on - strand, within Rru_A1500at 1772.302 kb on - strand, within Rru_A1500at 1772.302 kb on - strand, within Rru_A1500at 1772.380 kb on - strand, within Rru_A1500at 1772.380 kb on - strand, within Rru_A1500at 1772.407 kb on + strand, within Rru_A1500at 1772.407 kb on + strand, within Rru_A1500at 1772.407 kb on + strand, within Rru_A1500at 1772.408 kb on - strand, within Rru_A1500at 1772.408 kb on - strand, within Rru_A1500at 1772.737 kb on + strand, within Rru_A1500at 1772.738 kb on - strand, within Rru_A1500at 1772.738 kb on - strand, within Rru_A1500at 1772.738 kb on - strand, within Rru_A1500at 1772.773 kb on + strand, within Rru_A1500at 1772.773 kb on + strand, within Rru_A1500at 1772.773 kb on + strand, within Rru_A1500at 1772.773 kb on + strand, within Rru_A1500at 1772.773 kb on + strand, within Rru_A1500at 1772.773 kb on + strand, within Rru_A1500at 1772.774 kb on - strand, within Rru_A1500at 1772.774 kb on - strand, within Rru_A1500at 1772.774 kb on - strand, within Rru_A1500at 1772.774 kb on - strand, within Rru_A1500at 1772.774 kb on - strand, within Rru_A1500at 1772.774 kb on - strand, within Rru_A1500at 1773.184 kb on + strand, within Rru_A1500at 1773.325 kb on + strand, within Rru_A1500at 1773.325 kb on + strand, within Rru_A1500at 1773.325 kb on + strand, within Rru_A1500at 1773.325 kb on + strand, within Rru_A1500at 1773.325 kb on + strand, within Rru_A1500at 1773.326 kb on - strand, within Rru_A1500at 1773.326 kb on - strand, within Rru_A1500at 1773.326 kb on - strand, within Rru_A1500at 1773.330 kb on + strand, within Rru_A1500at 1773.551 kb on - strand, within Rru_A1500at 1773.958 kb on + strand, within Rru_A1500at 1773.958 kb on + strand, within Rru_A1500at 1774.075 kb on + strand, within Rru_A1500at 1774.075 kb on + strand, within Rru_A1500at 1774.076 kb on - strand, within Rru_A1500at 1774.591 kb on + strand, within Rru_A1500at 1774.592 kb on - strand, within Rru_A1500at 1774.592 kb on - strand, within Rru_A1500at 1774.593 kb on + strand, within Rru_A1500at 1774.593 kb on + strand, within Rru_A1500at 1774.593 kb on + strand, within Rru_A1500at 1774.593 kb on + strand, within Rru_A1500at 1774.594 kb on - strand, within Rru_A1500at 1774.594 kb on - strand, within Rru_A1500at 1774.594 kb on - strand, within Rru_A1500at 1774.740 kb on + strand, within Rru_A1500at 1774.740 kb on + strand, within Rru_A1500at 1774.741 kb on - strand, within Rru_A1500at 1774.870 kb on + strand, within Rru_A1500at 1774.871 kb on - strand, within Rru_A1500at 1774.948 kb on + strand, within Rru_A1500at 1774.949 kb on - strand, within Rru_A1500at 1774.949 kb on - strand, within Rru_A1500at 1775.020 kb on + strand, within Rru_A1500at 1775.021 kb on - strand, within Rru_A1500at 1775.021 kb on - strand, within Rru_A1500at 1775.105 kb on - strandat 1775.105 kb on - strandat 1775.106 kb on + strandat 1775.106 kb on + strandat 1775.107 kb on - strandat 1775.735 kb on - strandat 1775.772 kb on - strandat 1775.824 kb on + strandat 1775.897 kb on + strandat 1775.898 kb on - strandat 1776.125 kb on + strand, within Rru_A1501at 1776.126 kb on - strand, within Rru_A1501at 1776.126 kb on - strand, within Rru_A1501at 1776.126 kb on - strand, within Rru_A1501at 1776.203 kb on + strand, within Rru_A1501at 1776.215 kb on + strand, within Rru_A1501at 1776.215 kb on + strand, within Rru_A1501at 1776.216 kb on - strand, within Rru_A1501at 1776.335 kb on + strandat 1776.336 kb on - strandat 1776.389 kb on + strandat 1776.389 kb on + strandat 1776.389 kb on + strandat 1776.390 kb on - strandat 1776.395 kb on - strandat 1776.407 kb on + strandat 1776.407 kb on + strandat 1776.407 kb on + strandat 1776.407 kb on + strandat 1776.408 kb on - strandat 1776.408 kb on - strandat 1776.408 kb on - strandat 1776.426 kb on + strandat 1776.426 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 18 uM
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1,770,143 + Rru_A1499 0.17 +0.1
1,770,591 - +0.1
1,770,591 - +0.1
1,770,622 + +0.1
1,770,622 + -0.2
1,770,622 + +1.2
1,770,623 - +0.6
1,770,825 + +0.1
1,770,825 + +0.1
1,770,825 + -0.3
1,770,825 + +0.1
1,770,825 + +1.1
1,770,826 - +0.1
1,770,827 + -0.3
1,770,828 - +1.3
1,770,869 - +2.1
1,770,978 - -0.9
1,771,023 + -0.3
1,771,024 - +0.1
1,771,366 + +0.1
1,771,366 + +0.2
1,771,366 + -0.3
1,771,367 - +0.1
1,771,367 - -0.2
1,771,367 - -0.2
1,771,367 - +0.1
1,771,367 - -0.9
1,771,367 - -0.1
1,771,489 + Rru_A1500 0.10 +0.1
1,771,491 + Rru_A1500 0.10 +0.1
1,771,492 - Rru_A1500 0.10 -0.1
1,771,492 - Rru_A1500 0.10 +0.5
1,771,503 + Rru_A1500 0.10 -0.9
1,771,504 - Rru_A1500 0.10 -0.6
1,771,813 + Rru_A1500 0.17 +0.1
1,771,813 + Rru_A1500 0.17 -1.9
1,771,813 + Rru_A1500 0.17 -1.9
1,771,829 - Rru_A1500 0.18 -0.1
1,771,829 - Rru_A1500 0.18 -0.9
1,771,829 - Rru_A1500 0.18 +0.1
1,772,089 - Rru_A1500 0.24 -0.9
1,772,089 - Rru_A1500 0.24 +0.1
1,772,089 - Rru_A1500 0.24 -0.6
1,772,107 + Rru_A1500 0.24 +0.0
1,772,108 - Rru_A1500 0.24 +0.1
1,772,108 - Rru_A1500 0.24 -0.2
1,772,108 - Rru_A1500 0.24 +0.1
1,772,120 + Rru_A1500 0.24 +0.1
1,772,120 + Rru_A1500 0.24 -0.2
1,772,121 - Rru_A1500 0.24 +0.9
1,772,121 - Rru_A1500 0.24 -0.3
1,772,121 - Rru_A1500 0.24 +0.1
1,772,183 - Rru_A1500 0.26 -0.9
1,772,301 + Rru_A1500 0.28 +0.1
1,772,301 + Rru_A1500 0.28 -0.3
1,772,302 - Rru_A1500 0.28 +0.4
1,772,302 - Rru_A1500 0.28 +1.0
1,772,302 - Rru_A1500 0.28 -1.3
1,772,302 - Rru_A1500 0.28 +0.2
1,772,380 - Rru_A1500 0.30 +0.5
1,772,380 - Rru_A1500 0.30 +1.4
1,772,407 + Rru_A1500 0.31 +0.4
1,772,407 + Rru_A1500 0.31 +1.0
1,772,407 + Rru_A1500 0.31 +0.1
1,772,408 - Rru_A1500 0.31 +0.1
1,772,408 - Rru_A1500 0.31 -1.2
1,772,737 + Rru_A1500 0.38 +0.1
1,772,738 - Rru_A1500 0.38 +0.1
1,772,738 - Rru_A1500 0.38 +0.9
1,772,738 - Rru_A1500 0.38 +0.1
1,772,773 + Rru_A1500 0.39 +0.1
1,772,773 + Rru_A1500 0.39 -0.4
1,772,773 + Rru_A1500 0.39 +0.0
1,772,773 + Rru_A1500 0.39 -0.6
1,772,773 + Rru_A1500 0.39 +0.2
1,772,773 + Rru_A1500 0.39 +0.0
1,772,774 - Rru_A1500 0.39 +0.1
1,772,774 - Rru_A1500 0.39 +0.1
1,772,774 - Rru_A1500 0.39 +0.8
1,772,774 - Rru_A1500 0.39 -0.6
1,772,774 - Rru_A1500 0.39 +0.1
1,772,774 - Rru_A1500 0.39 +0.3
1,773,184 + Rru_A1500 0.48 +0.1
1,773,325 + Rru_A1500 0.51 +0.8
1,773,325 + Rru_A1500 0.51 +0.1
1,773,325 + Rru_A1500 0.51 +0.3
1,773,325 + Rru_A1500 0.51 +0.1
1,773,325 + Rru_A1500 0.51 +0.1
1,773,326 - Rru_A1500 0.51 +1.0
1,773,326 - Rru_A1500 0.51 +0.0
1,773,326 - Rru_A1500 0.51 -0.9
1,773,330 + Rru_A1500 0.51 -0.1
1,773,551 - Rru_A1500 0.56 +0.1
1,773,958 + Rru_A1500 0.66 -0.2
1,773,958 + Rru_A1500 0.66 -0.8
1,774,075 + Rru_A1500 0.68 +0.6
1,774,075 + Rru_A1500 0.68 +0.1
1,774,076 - Rru_A1500 0.68 -0.4
1,774,591 + Rru_A1500 0.80 -0.4
1,774,592 - Rru_A1500 0.80 -0.5
1,774,592 - Rru_A1500 0.80 +0.5
1,774,593 + Rru_A1500 0.80 +0.2
1,774,593 + Rru_A1500 0.80 +0.8
1,774,593 + Rru_A1500 0.80 +0.1
1,774,593 + Rru_A1500 0.80 +0.1
1,774,594 - Rru_A1500 0.80 -0.9
1,774,594 - Rru_A1500 0.80 +0.1
1,774,594 - Rru_A1500 0.80 +0.3
1,774,740 + Rru_A1500 0.83 -1.9
1,774,740 + Rru_A1500 0.83 +0.1
1,774,741 - Rru_A1500 0.83 +0.4
1,774,870 + Rru_A1500 0.86 +0.1
1,774,871 - Rru_A1500 0.86 +0.1
1,774,948 + Rru_A1500 0.88 +0.1
1,774,949 - Rru_A1500 0.88 +0.1
1,774,949 - Rru_A1500 0.88 +0.1
1,775,020 + Rru_A1500 0.89 +0.4
1,775,021 - Rru_A1500 0.89 +1.1
1,775,021 - Rru_A1500 0.89 +0.9
1,775,105 - +0.1
1,775,105 - +0.1
1,775,106 + -0.3
1,775,106 + +0.6
1,775,107 - -0.3
1,775,735 - -0.0
1,775,772 - -1.0
1,775,824 + +0.1
1,775,897 + +0.1
1,775,898 - +0.1
1,776,125 + Rru_A1501 0.32 +0.1
1,776,126 - Rru_A1501 0.33 +0.2
1,776,126 - Rru_A1501 0.33 +0.3
1,776,126 - Rru_A1501 0.33 +0.0
1,776,203 + Rru_A1501 0.57 +1.0
1,776,215 + Rru_A1501 0.61 +1.3
1,776,215 + Rru_A1501 0.61 +0.8
1,776,216 - Rru_A1501 0.61 +0.1
1,776,335 + +1.9
1,776,336 - +0.1
1,776,389 + +0.1
1,776,389 + +0.1
1,776,389 + +2.2
1,776,390 - -0.7
1,776,395 - +0.5
1,776,407 + +0.1
1,776,407 + +0.1
1,776,407 + +0.1
1,776,407 + +1.4
1,776,408 - +0.1
1,776,408 - +0.3
1,776,408 - -0.4
1,776,426 + -0.9
1,776,426 + -0.1

Or see this region's nucleotide sequence