Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1211

Experiment: acetate; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1210 and Rru_A1211 are separated by 47 nucleotidesRru_A1211 and Rru_A1212 overlap by 1 nucleotides Rru_A1210: Rru_A1210 - Malate dehydrogenase, NAD-dependent (NCBI), at 1,427,956 to 1,428,912 _A1210 Rru_A1211: Rru_A1211 - Succinyl-CoA synthetase, beta subunit (NCBI), at 1,428,960 to 1,430,159 _A1211 Rru_A1212: Rru_A1212 - Succinyl-CoA ligase, alpha subunit (NCBI), at 1,430,159 to 1,431,037 _A1212 Position (kb) 1428 1429 1430 1431Strain fitness (log2 ratio) -1 0 1at 1431.103 kb on + strandat 1431.103 kb on + strandat 1431.107 kb on + strandat 1431.107 kb on + strandat 1431.107 kb on + strandat 1431.107 kb on + strandat 1431.107 kb on + strandat 1431.110 kb on + strandat 1431.110 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 18 uM
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1,431,103 + +0.0
1,431,103 + +0.9
1,431,107 + +1.5
1,431,107 + +0.2
1,431,107 + +1.1
1,431,107 + -1.0
1,431,107 + +1.2
1,431,110 + +0.8
1,431,110 + +0.0

Or see this region's nucleotide sequence