Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0886

Experiment: acetate; Light intensity 18 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate; Light intensity 18 uM
1,059,849	+		Rru_A0885	0.62	+0.1
1,059,850	-		Rru_A0885	0.62	+0.1
1,059,858	+		Rru_A0885	0.63	+0.1
1,059,858	+		Rru_A0885	0.63	+0.1
1,059,859	-		Rru_A0885	0.63	-0.5
1,059,859	-		Rru_A0885	0.63	+0.1
1,059,859	-		Rru_A0885	0.63	-1.5
1,059,913	+		Rru_A0885	0.65	-1.5
1,059,913	+		Rru_A0885	0.65	-0.8
1,059,914	-		Rru_A0885	0.65	+0.7
1,059,914	-		Rru_A0885	0.65	+0.1
1,059,914	-		Rru_A0885	0.65	+0.1
1,059,914	-		Rru_A0885	0.65	+0.0
1,059,914	-		Rru_A0885	0.65	-0.3
1,059,916	-		Rru_A0885	0.65	+0.1
1,059,916	-		Rru_A0885	0.65	+0.1
1,060,041	+		Rru_A0885	0.70	+0.1
1,060,041	+		Rru_A0885	0.70	+0.4
1,060,043	+		Rru_A0885	0.70	+0.5
1,060,044	-		Rru_A0885	0.70	+0.1
1,060,044	-		Rru_A0885	0.70	+0.1
1,060,068	+		Rru_A0885	0.71	-0.2
1,060,152	+		Rru_A0885	0.75	+0.1
1,060,153	-		Rru_A0885	0.75	+0.4
1,060,170	+		Rru_A0885	0.76	-0.9
1,060,171	-		Rru_A0885	0.76	+0.1
1,060,171	-		Rru_A0885	0.76	-0.5
1,060,171	-		Rru_A0885	0.76	+0.1
1,060,190	+		Rru_A0885	0.76	+0.4
1,060,190	+		Rru_A0885	0.76	+0.1
1,060,190	+		Rru_A0885	0.76	+0.1
1,060,190	+		Rru_A0885	0.76	+0.1
1,060,190	+		Rru_A0885	0.76	-0.9
1,060,190	+		Rru_A0885	0.76	-0.9
1,060,191	-		Rru_A0885	0.76	+0.1
1,060,191	-		Rru_A0885	0.76	+0.1
1,060,191	-		Rru_A0885	0.76	+0.3
1,060,191	-		Rru_A0885	0.76	+0.1
1,060,372	-		Rru_A0885	0.84	+0.1
1,060,373	+		Rru_A0885	0.84	+1.1
1,060,373	+		Rru_A0885	0.84	+2.4
1,060,374	-		Rru_A0885	0.84	+0.1
1,060,374	-		Rru_A0885	0.84	+0.1
1,060,374	-		Rru_A0885	0.84	-1.1
1,060,374	-		Rru_A0885	0.84	-0.2
1,060,374	-		Rru_A0885	0.84	-0.4
1,060,377	+		Rru_A0885	0.84	+1.8
1,060,377	+		Rru_A0885	0.84	+0.1
1,060,378	-		Rru_A0885	0.84	-0.2
1,060,378	-		Rru_A0885	0.84	-0.5
1,060,378	-		Rru_A0885	0.84	-1.1
1,060,378	-		Rru_A0885	0.84	+1.3
1,060,378	-		Rru_A0885	0.84	-0.9
1,060,452	-		Rru_A0885	0.87	-0.3
1,060,474	-		Rru_A0885	0.88	-0.2
1,060,474	-		Rru_A0885	0.88	+0.1
1,060,665	+				+0.8
1,060,702	-				+0.1
1,060,750	-				+0.1
1,060,750	-				-0.1
1,060,813	-				+0.1
1,060,813	-				+1.6
1,060,875	+				+0.1
1,060,875	+				-0.1
1,060,876	-				+0.1
1,060,876	-				+0.9
1,060,876	-				+0.1
1,061,275	-		Rru_A0886	0.15	+0.1
1,061,335	+		Rru_A0886	0.17	-1.3
1,061,335	+		Rru_A0886	0.17	+0.1
1,061,358	+		Rru_A0886	0.17	+0.2
1,061,358	+		Rru_A0886	0.17	-1.5
1,061,358	+		Rru_A0886	0.17	+1.0
1,061,359	-		Rru_A0886	0.17	+0.6
1,061,359	-		Rru_A0886	0.17	+0.1
1,061,449	-		Rru_A0886	0.20	-0.0
1,061,496	+		Rru_A0886	0.22	+0.1
1,061,497	-		Rru_A0886	0.22	+0.0
1,061,596	+		Rru_A0886	0.25	-0.9
1,061,597	-		Rru_A0886	0.25	+0.1
1,061,646	+		Rru_A0886	0.26	+1.0
1,061,646	+		Rru_A0886	0.26	+0.6
1,061,646	+		Rru_A0886	0.26	-0.9
1,061,647	-		Rru_A0886	0.26	-1.2
1,061,679	+		Rru_A0886	0.27	+0.3
1,061,694	+		Rru_A0886	0.28	+0.4
1,061,695	-		Rru_A0886	0.28	+0.1
1,061,695	-		Rru_A0886	0.28	+0.3
1,061,695	-		Rru_A0886	0.28	-0.2
1,061,695	-		Rru_A0886	0.28	-0.2
1,061,770	-		Rru_A0886	0.30	+0.1
1,061,793	+		Rru_A0886	0.31	+0.1
1,061,793	+		Rru_A0886	0.31	+0.1
1,061,793	+		Rru_A0886	0.31	-0.9
1,061,794	-		Rru_A0886	0.31	-1.1
1,061,875	-		Rru_A0886	0.34	+0.3
1,061,875	-		Rru_A0886	0.34	+0.1
1,062,237	+		Rru_A0886	0.45	+0.1
1,062,237	+		Rru_A0886	0.45	+0.2
1,062,237	+		Rru_A0886	0.45	+0.6
1,062,237	+		Rru_A0886	0.45	+0.7
1,062,237	+		Rru_A0886	0.45	+0.1
1,062,238	-		Rru_A0886	0.45	-1.5
1,062,244	+		Rru_A0886	0.45	+1.1
1,062,244	+		Rru_A0886	0.45	+0.4
1,062,244	+		Rru_A0886	0.45	+0.1
1,062,244	+		Rru_A0886	0.45	+0.1
1,062,245	-		Rru_A0886	0.45	+0.1
1,062,245	-		Rru_A0886	0.45	-0.7
1,062,291	+		Rru_A0886	0.47	-1.2
1,062,291	+		Rru_A0886	0.47	+0.4
1,062,292	-		Rru_A0886	0.47	+0.1
1,062,315	+		Rru_A0886	0.48	+0.1
1,062,315	+		Rru_A0886	0.48	-0.6
1,062,370	-		Rru_A0886	0.49	-0.9
1,062,779	+		Rru_A0886	0.62	+0.1
1,062,780	-		Rru_A0886	0.62	-0.2
1,062,937	+		Rru_A0886	0.67	+0.1
1,062,937	+		Rru_A0886	0.67	+1.1
1,062,984	+		Rru_A0886	0.69	+0.6
1,063,290	+		Rru_A0886	0.78	-1.4
1,063,417	-		Rru_A0886	0.82	-0.1
1,063,506	+		Rru_A0886	0.85	+0.1
1,063,506	+		Rru_A0886	0.85	-0.0
1,063,506	+		Rru_A0886	0.85	+0.1
1,063,507	-		Rru_A0886	0.85	-0.9
1,063,518	+		Rru_A0886	0.86	+0.1
1,063,734	+				+0.1
1,063,734	+				-0.8
1,063,734	+				+0.1
1,063,734	+				+1.0
1,063,734	+				+0.8
1,063,734	+				+0.1
1,063,735	-				+0.2
1,063,735	-				-2.4
1,063,735	-				+0.1
1,063,735	-				-0.7
1,063,735	-				+0.5
1,063,735	-				-0.6
1,063,735	-				+0.1
1,063,735	-				-0.9
1,064,211	-		Rru_A0887	0.17	+0.1
1,064,211	-		Rru_A0887	0.17	-1.0
1,064,211	-		Rru_A0887	0.17	+0.1
1,064,211	-		Rru_A0887	0.17	+0.1
1,064,394	+		Rru_A0887	0.32	+0.4
1,064,394	+		Rru_A0887	0.32	+1.0
1,064,394	+		Rru_A0887	0.32	+0.1
1,064,395	-		Rru_A0887	0.32	-0.3
1,064,395	-		Rru_A0887	0.32	+0.8
1,064,412	-		Rru_A0887	0.34	+0.6
1,064,502	+		Rru_A0887	0.41	+0.0
1,064,503	-		Rru_A0887	0.41	+0.1
1,064,503	-		Rru_A0887	0.41	+0.1
1,064,503	-		Rru_A0887	0.41	+0.1
1,064,503	-		Rru_A0887	0.41	-0.6
1,064,503	-		Rru_A0887	0.41	+0.1
1,064,503	-		Rru_A0887	0.41	-0.9
1,064,503	-		Rru_A0887	0.41	+0.1
1,064,503	-		Rru_A0887	0.41	-1.2
1,064,504	+		Rru_A0887	0.41	+1.2
1,064,504	+		Rru_A0887	0.41	+0.5
1,064,504	+		Rru_A0887	0.41	+0.8
1,064,504	+		Rru_A0887	0.41	+1.6
1,064,505	-		Rru_A0887	0.42	-0.5
1,064,505	-		Rru_A0887	0.42	-1.1
1,064,505	-		Rru_A0887	0.42	+0.1
1,064,505	-		Rru_A0887	0.42	+0.4
1,064,505	-		Rru_A0887	0.42	-1.2
1,064,747	+		Rru_A0887	0.62	+0.1
1,064,873	+		Rru_A0887	0.72	-0.2
1,064,874	-		Rru_A0887	0.72	+0.3