Experiment: acetate; Light intensity 18 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0801 and Rru_A0802 are separated by 6 nucleotides Rru_A0802 and Rru_A0803 overlap by 1 nucleotides Rru_A0803 and Rru_A0804 are separated by 411 nucleotides
Rru_A0801: Rru_A0801 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 956,429 to 957,319
_A0801
Rru_A0802: Rru_A0802 - ABC transporter component (NCBI), at 957,326 to 958,156
_A0802
Rru_A0803: Rru_A0803 - ABC transporter component (NCBI), at 958,156 to 958,914
_A0803
Rru_A0804: Rru_A0804 - Transcriptional Regulator, LysR family (NCBI), at 959,326 to 960,291
_A0804
Position (kb) 958
959 Strain fitness (log2 ratio) -2
-1
0
1 at 957.331 kb on + strand at 957.331 kb on + strand at 957.331 kb on + strand at 957.331 kb on + strand at 957.332 kb on - strand at 957.332 kb on - strand at 957.332 kb on - strand at 957.499 kb on + strand, within Rru_A0802 at 957.500 kb on - strand, within Rru_A0802 at 957.681 kb on - strand, within Rru_A0802 at 957.773 kb on + strand, within Rru_A0802 at 957.773 kb on + strand, within Rru_A0802 at 957.773 kb on + strand, within Rru_A0802 at 957.773 kb on + strand, within Rru_A0802 at 957.774 kb on - strand, within Rru_A0802 at 957.774 kb on - strand, within Rru_A0802 at 958.076 kb on + strand at 958.076 kb on + strand at 958.076 kb on + strand at 958.076 kb on + strand at 958.076 kb on + strand at 958.077 kb on - strand at 958.077 kb on - strand at 958.173 kb on - strand at 958.173 kb on - strand at 958.173 kb on - strand at 958.173 kb on - strand at 958.429 kb on + strand, within Rru_A0803 at 958.429 kb on + strand, within Rru_A0803 at 958.430 kb on - strand, within Rru_A0803 at 958.430 kb on - strand, within Rru_A0803 at 958.502 kb on - strand, within Rru_A0803 at 958.761 kb on - strand, within Rru_A0803 at 958.912 kb on + strand at 958.912 kb on + strand at 958.912 kb on + strand at 958.913 kb on - strand at 958.920 kb on + strand at 958.921 kb on - strand at 959.014 kb on + strand at 959.015 kb on - strand at 959.015 kb on - strand at 959.015 kb on - strand at 959.328 kb on - strand at 959.498 kb on - strand, within Rru_A0804 at 959.500 kb on + strand, within Rru_A0804 at 959.500 kb on + strand, within Rru_A0804 at 959.500 kb on + strand, within Rru_A0804 at 959.500 kb on + strand, within Rru_A0804 at 959.501 kb on - strand, within Rru_A0804 at 959.603 kb on - strand, within Rru_A0804 at 959.603 kb on - strand, within Rru_A0804 at 959.751 kb on - strand, within Rru_A0804 at 959.751 kb on - strand, within Rru_A0804
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 18 uM remove 957,331 + -0.7 957,331 + -0.9 957,331 + -1.1 957,331 + -0.8 957,332 - -0.3 957,332 - -0.1 957,332 - -0.6 957,499 + Rru_A0802 0.21 +0.2 957,500 - Rru_A0802 0.21 +0.2 957,681 - Rru_A0802 0.43 +0.1 957,773 + Rru_A0802 0.54 +0.1 957,773 + Rru_A0802 0.54 +0.2 957,773 + Rru_A0802 0.54 -1.2 957,773 + Rru_A0802 0.54 +0.1 957,774 - Rru_A0802 0.54 +0.1 957,774 - Rru_A0802 0.54 +0.4 958,076 + +0.1 958,076 + -1.5 958,076 + -0.3 958,076 + -0.9 958,076 + +0.5 958,077 - -0.9 958,077 - +0.1 958,173 - +0.1 958,173 - +0.6 958,173 - +0.1 958,173 - -0.9 958,429 + Rru_A0803 0.36 +0.1 958,429 + Rru_A0803 0.36 +0.1 958,430 - Rru_A0803 0.36 -0.1 958,430 - Rru_A0803 0.36 -0.3 958,502 - Rru_A0803 0.46 +0.0 958,761 - Rru_A0803 0.80 +0.1 958,912 + +0.1 958,912 + +0.1 958,912 + +0.7 958,913 - -0.6 958,920 + +0.1 958,921 - -0.1 959,014 + -0.9 959,015 - +0.1 959,015 - +0.1 959,015 - +0.1 959,328 - +0.2 959,498 - Rru_A0804 0.18 -0.8 959,500 + Rru_A0804 0.18 +0.8 959,500 + Rru_A0804 0.18 +0.1 959,500 + Rru_A0804 0.18 -0.2 959,500 + Rru_A0804 0.18 +0.1 959,501 - Rru_A0804 0.18 +0.1 959,603 - Rru_A0804 0.29 +0.1 959,603 - Rru_A0804 0.29 -1.8 959,751 - Rru_A0804 0.44 -0.4 959,751 - Rru_A0804 0.44 +0.1
Or see this region's nucleotide sequence