Experiment: acetate; Light intensity 18 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0771 and Rru_A0772 are separated by 232 nucleotides Rru_A0772 and Rru_A0773 are separated by 5 nucleotides
Rru_A0771: Rru_A0771 - hypothetical protein (NCBI), at 917,373 to 921,860
_A0771
Rru_A0772: Rru_A0772 - Oxidoreductase/nitrogenase, component 1 (NCBI), at 922,093 to 923,418
_A0772
Rru_A0773: Rru_A0773 - Nitrogenase (NCBI), at 923,424 to 924,887
_A0773
Position (kb) 922
923
924 Strain fitness (log2 ratio) -2
-1
0
1
2 at 921.142 kb on - strand, within Rru_A0771 at 921.156 kb on - strand, within Rru_A0771 at 921.156 kb on - strand, within Rru_A0771 at 921.236 kb on + strand, within Rru_A0771 at 921.359 kb on - strand, within Rru_A0771 at 921.363 kb on - strand, within Rru_A0771 at 921.366 kb on - strand, within Rru_A0771 at 921.436 kb on + strand at 921.448 kb on + strand at 921.448 kb on + strand at 921.448 kb on + strand at 921.448 kb on + strand at 921.449 kb on - strand at 921.449 kb on - strand at 921.598 kb on + strand at 921.599 kb on - strand at 921.599 kb on - strand at 921.599 kb on - strand at 921.769 kb on + strand at 921.770 kb on - strand at 921.863 kb on - strand at 921.880 kb on - strand at 921.976 kb on + strand at 922.141 kb on + strand at 922.163 kb on + strand at 922.164 kb on - strand at 922.164 kb on - strand at 922.164 kb on - strand at 922.373 kb on + strand, within Rru_A0772 at 922.374 kb on - strand, within Rru_A0772 at 922.562 kb on + strand, within Rru_A0772 at 922.571 kb on + strand, within Rru_A0772 at 922.571 kb on + strand, within Rru_A0772 at 922.572 kb on - strand, within Rru_A0772 at 922.572 kb on - strand, within Rru_A0772 at 922.574 kb on + strand, within Rru_A0772 at 922.574 kb on + strand, within Rru_A0772 at 922.574 kb on + strand, within Rru_A0772 at 922.575 kb on - strand, within Rru_A0772 at 922.770 kb on + strand, within Rru_A0772 at 922.834 kb on - strand, within Rru_A0772 at 923.159 kb on - strand, within Rru_A0772 at 923.159 kb on - strand, within Rru_A0772 at 923.254 kb on - strand, within Rru_A0772 at 923.255 kb on + strand, within Rru_A0772 at 923.255 kb on + strand, within Rru_A0772 at 923.256 kb on - strand, within Rru_A0772 at 923.270 kb on + strand, within Rru_A0772 at 923.425 kb on + strand at 923.443 kb on + strand at 923.596 kb on + strand, within Rru_A0773 at 923.596 kb on + strand, within Rru_A0773 at 923.596 kb on + strand, within Rru_A0773 at 923.596 kb on + strand, within Rru_A0773 at 923.596 kb on + strand, within Rru_A0773 at 923.596 kb on + strand, within Rru_A0773 at 923.596 kb on + strand, within Rru_A0773 at 923.597 kb on - strand, within Rru_A0773 at 923.597 kb on - strand, within Rru_A0773 at 923.597 kb on - strand, within Rru_A0773 at 923.660 kb on + strand, within Rru_A0773 at 923.661 kb on - strand, within Rru_A0773 at 923.722 kb on + strand, within Rru_A0773 at 923.722 kb on + strand, within Rru_A0773 at 923.861 kb on + strand, within Rru_A0773 at 923.862 kb on - strand, within Rru_A0773 at 923.965 kb on + strand, within Rru_A0773 at 923.965 kb on + strand, within Rru_A0773 at 923.965 kb on + strand, within Rru_A0773 at 923.965 kb on + strand, within Rru_A0773 at 923.965 kb on + strand, within Rru_A0773 at 923.965 kb on + strand, within Rru_A0773 at 923.966 kb on - strand, within Rru_A0773 at 923.966 kb on - strand, within Rru_A0773 at 924.122 kb on + strand, within Rru_A0773 at 924.122 kb on + strand, within Rru_A0773 at 924.122 kb on + strand, within Rru_A0773 at 924.122 kb on + strand, within Rru_A0773 at 924.122 kb on + strand, within Rru_A0773 at 924.123 kb on - strand, within Rru_A0773 at 924.123 kb on - strand, within Rru_A0773 at 924.123 kb on - strand, within Rru_A0773 at 924.123 kb on - strand, within Rru_A0773 at 924.257 kb on + strand, within Rru_A0773
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 18 uM remove 921,142 - Rru_A0771 0.84 -0.5 921,156 - Rru_A0771 0.84 -0.2 921,156 - Rru_A0771 0.84 +0.2 921,236 + Rru_A0771 0.86 +0.7 921,359 - Rru_A0771 0.89 -1.9 921,363 - Rru_A0771 0.89 +0.1 921,366 - Rru_A0771 0.89 -0.0 921,436 + -0.2 921,448 + +0.1 921,448 + -0.2 921,448 + +0.3 921,448 + +0.1 921,449 - +0.1 921,449 - +0.1 921,598 + -0.6 921,599 - -0.2 921,599 - +0.0 921,599 - -0.3 921,769 + +0.1 921,770 - +0.2 921,863 - +0.2 921,880 - +0.1 921,976 + +1.3 922,141 + +0.2 922,163 + +0.1 922,164 - +0.1 922,164 - +0.0 922,164 - +1.1 922,373 + Rru_A0772 0.21 -0.6 922,374 - Rru_A0772 0.21 -0.2 922,562 + Rru_A0772 0.35 +0.1 922,571 + Rru_A0772 0.36 +0.1 922,571 + Rru_A0772 0.36 +0.1 922,572 - Rru_A0772 0.36 +0.1 922,572 - Rru_A0772 0.36 -0.7 922,574 + Rru_A0772 0.36 +0.7 922,574 + Rru_A0772 0.36 +0.3 922,574 + Rru_A0772 0.36 +0.7 922,575 - Rru_A0772 0.36 -0.3 922,770 + Rru_A0772 0.51 +0.1 922,834 - Rru_A0772 0.56 +0.1 923,159 - Rru_A0772 0.80 -1.5 923,159 - Rru_A0772 0.80 +0.5 923,254 - Rru_A0772 0.88 +1.0 923,255 + Rru_A0772 0.88 +0.1 923,255 + Rru_A0772 0.88 -0.8 923,256 - Rru_A0772 0.88 +0.1 923,270 + Rru_A0772 0.89 +0.6 923,425 + +0.5 923,443 + +0.1 923,596 + Rru_A0773 0.12 +2.1 923,596 + Rru_A0773 0.12 -1.3 923,596 + Rru_A0773 0.12 +0.3 923,596 + Rru_A0773 0.12 +0.7 923,596 + Rru_A0773 0.12 +0.1 923,596 + Rru_A0773 0.12 +0.7 923,596 + Rru_A0773 0.12 +0.1 923,597 - Rru_A0773 0.12 -0.5 923,597 - Rru_A0773 0.12 +0.1 923,597 - Rru_A0773 0.12 -0.0 923,660 + Rru_A0773 0.16 +0.1 923,661 - Rru_A0773 0.16 -0.3 923,722 + Rru_A0773 0.20 -0.4 923,722 + Rru_A0773 0.20 -0.6 923,861 + Rru_A0773 0.30 +0.5 923,862 - Rru_A0773 0.30 +0.1 923,965 + Rru_A0773 0.37 -0.4 923,965 + Rru_A0773 0.37 +0.2 923,965 + Rru_A0773 0.37 +0.1 923,965 + Rru_A0773 0.37 +0.2 923,965 + Rru_A0773 0.37 -0.9 923,965 + Rru_A0773 0.37 -0.2 923,966 - Rru_A0773 0.37 +0.1 923,966 - Rru_A0773 0.37 +0.1 924,122 + Rru_A0773 0.48 +0.2 924,122 + Rru_A0773 0.48 -0.4 924,122 + Rru_A0773 0.48 -0.5 924,122 + Rru_A0773 0.48 -0.2 924,122 + Rru_A0773 0.48 +0.6 924,123 - Rru_A0773 0.48 +0.1 924,123 - Rru_A0773 0.48 -0.0 924,123 - Rru_A0773 0.48 +0.1 924,123 - Rru_A0773 0.48 -0.2 924,257 + Rru_A0773 0.57 +0.6
Or see this region's nucleotide sequence