Experiment: acetate; Light intensity 18 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_AR0007 and Rru_AR0008 are separated by 119 nucleotides Rru_AR0008 and Rru_AR0009 are separated by 96 nucleotides Rru_AR0009 and Rru_A0165 are separated by 287 nucleotides Rru_A0165 and 11438559 are separated by 222 nucleotides 11438559 and 11580922 overlap by 29 nucleotides 11580922 and 11723314 overlap by 29 nucleotides 11723314 and 11438560 are separated by 0 nucleotides 11438560 and 11580923 overlap by 32 nucleotides 11580923 and 11723315 overlap by 32 nucleotides 11723315 and 11438561 are separated by 0 nucleotides
Rru_AR0007: Rru_AR0007 - 23S ribosomal RNA (NCBI), at 194,770 to 197,527
_AR0007
Rru_AR0008: Rru_AR0008 - 5S ribosomal RNA (NCBI), at 197,647 to 197,761
_AR0008
Rru_AR0009: Rru_AR0009 - tRNA-Met (NCBI), at 197,858 to 197,934
_AR0009
Rru_A0165: Rru_A0165 - hypothetical protein (NCBI), at 198,222 to 198,455
_A0165
11438559 - no description, at 198,678 to 198,706
11438559
11580922 - no description, at 198,678 to 198,706
11580922
11723314 - no description, at 198,678 to 198,706
11723314
11438560 - no description, at 198,707 to 198,738
11438560
11580923 - no description, at 198,707 to 198,738
11580923
11723315 - no description, at 198,707 to 198,738
11723315
11438561 - no description, at 198,739 to 198,767
11438561
11580924 - no description, at 198,739 to 198,767
11580924
11723316 - no description, at 198,739 to 198,767
11723316
Position (kb) 197
198 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 197.605 kb on - strand at 197.746 kb on + strand, within Rru_AR0008 at 197.746 kb on + strand, within Rru_AR0008 at 197.746 kb on + strand, within Rru_AR0008 at 197.746 kb on + strand, within Rru_AR0008 at 197.746 kb on + strand, within Rru_AR0008 at 198.071 kb on + strand at 198.187 kb on + strand at 198.187 kb on + strand at 198.188 kb on - strand at 198.188 kb on - strand at 198.188 kb on - strand at 198.188 kb on - strand at 198.495 kb on + strand at 198.495 kb on + strand at 198.496 kb on - strand at 198.548 kb on + strand at 198.549 kb on - strand at 198.549 kb on - strand at 198.552 kb on - strand at 198.568 kb on + strand at 198.569 kb on - strand at 198.571 kb on + strand at 198.572 kb on - strand at 198.572 kb on - strand at 198.587 kb on + strand at 198.588 kb on - strand at 198.588 kb on - strand at 198.607 kb on + strand at 198.608 kb on - strand at 198.610 kb on + strand at 198.611 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 18 uM remove 197,605 - -1.0 197,746 + Rru_AR0008 0.86 -0.7 197,746 + Rru_AR0008 0.86 +1.3 197,746 + Rru_AR0008 0.86 +0.0 197,746 + Rru_AR0008 0.86 +0.9 197,746 + Rru_AR0008 0.86 +4.0 198,071 + -0.1 198,187 + +0.0 198,187 + +0.7 198,188 - +0.0 198,188 - -1.0 198,188 - +0.8 198,188 - +0.0 198,495 + +0.0 198,495 + +0.6 198,496 - +0.0 198,548 + +0.0 198,549 - +0.0 198,549 - -0.7 198,552 - +0.5 198,568 + +0.0 198,569 - +0.0 198,571 + +0.2 198,572 - -1.0 198,572 - -1.0 198,587 + +1.1 198,588 - -1.3 198,588 - -0.5 198,607 + +1.0 198,608 - +0.0 198,610 + -1.0 198,611 - -1.5
Or see this region's nucleotide sequence