Experiment: acetate; Light intensity 18 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_B0033 and Rru_B0034 are separated by 118 nucleotides Rru_B0034 and Rru_B0035 overlap by 4 nucleotides Rru_B0035 and Rru_B0036 are separated by 28 nucleotides Rru_B0036 and Rru_B0037 are separated by 260 nucleotides
Rru_B0033: Rru_B0033 - hypothetical protein (NCBI), at 32,481 to 33,188
_B0033
Rru_B0034: Rru_B0034 - hypothetical protein (NCBI), at 33,307 to 33,534
_B0034
Rru_B0035: Rru_B0035 - Death-on-curing protein (NCBI), at 33,531 to 33,917
_B0035
Rru_B0036: Rru_B0036 - hypothetical protein (NCBI), at 33,946 to 35,112
_B0036
Rru_B0037: Rru_B0037 - Hemolysin-type calcium-binding region (NCBI), at 35,373 to 37,865
_B0037
Position (kb) 33
34
35
36 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 33.028 kb on + strand, within Rru_B0033 at 33.029 kb on - strand, within Rru_B0033 at 33.029 kb on - strand, within Rru_B0033 at 33.029 kb on - strand, within Rru_B0033 at 33.029 kb on - strand, within Rru_B0033 at 33.029 kb on - strand, within Rru_B0033 at 33.201 kb on - strand at 33.247 kb on + strand at 33.248 kb on - strand at 33.271 kb on + strand at 33.273 kb on + strand at 33.275 kb on + strand at 33.275 kb on + strand at 33.275 kb on + strand at 33.276 kb on - strand at 33.276 kb on - strand at 33.276 kb on - strand at 33.278 kb on + strand at 33.285 kb on + strand at 33.286 kb on - strand at 33.287 kb on + strand at 33.288 kb on - strand at 33.568 kb on - strand at 33.672 kb on + strand, within Rru_B0035 at 33.672 kb on + strand, within Rru_B0035 at 33.672 kb on + strand, within Rru_B0035 at 33.672 kb on + strand, within Rru_B0035 at 33.673 kb on - strand, within Rru_B0035 at 33.673 kb on - strand, within Rru_B0035 at 33.674 kb on + strand, within Rru_B0035 at 33.674 kb on + strand, within Rru_B0035 at 33.674 kb on + strand, within Rru_B0035 at 33.674 kb on + strand, within Rru_B0035 at 33.674 kb on + strand, within Rru_B0035 at 33.674 kb on + strand, within Rru_B0035 at 33.675 kb on - strand, within Rru_B0035 at 33.675 kb on - strand, within Rru_B0035 at 33.675 kb on - strand, within Rru_B0035 at 33.675 kb on - strand, within Rru_B0035 at 33.675 kb on - strand, within Rru_B0035 at 33.675 kb on - strand, within Rru_B0035 at 33.675 kb on - strand, within Rru_B0035 at 33.675 kb on - strand, within Rru_B0035 at 33.675 kb on - strand, within Rru_B0035 at 33.675 kb on - strand, within Rru_B0035 at 33.675 kb on - strand, within Rru_B0035 at 33.708 kb on + strand, within Rru_B0035 at 33.708 kb on + strand, within Rru_B0035 at 33.708 kb on + strand, within Rru_B0035 at 33.709 kb on - strand, within Rru_B0035 at 33.709 kb on - strand, within Rru_B0035 at 33.709 kb on - strand, within Rru_B0035 at 33.709 kb on - strand, within Rru_B0035 at 33.714 kb on + strand, within Rru_B0035 at 33.714 kb on + strand, within Rru_B0035 at 33.714 kb on + strand, within Rru_B0035 at 33.715 kb on - strand, within Rru_B0035 at 33.715 kb on - strand, within Rru_B0035 at 33.715 kb on - strand, within Rru_B0035 at 33.715 kb on - strand, within Rru_B0035 at 33.863 kb on + strand, within Rru_B0035 at 33.863 kb on + strand, within Rru_B0035 at 33.863 kb on + strand, within Rru_B0035 at 33.863 kb on + strand, within Rru_B0035 at 33.863 kb on + strand, within Rru_B0035 at 33.864 kb on - strand, within Rru_B0035 at 33.864 kb on - strand, within Rru_B0035 at 33.864 kb on - strand, within Rru_B0035 at 33.928 kb on + strand at 33.928 kb on + strand at 33.928 kb on + strand at 33.929 kb on - strand at 33.929 kb on - strand at 33.930 kb on + strand at 33.930 kb on + strand at 33.930 kb on + strand at 33.931 kb on - strand at 33.931 kb on - strand at 33.931 kb on - strand at 34.001 kb on + strand at 34.001 kb on + strand at 34.001 kb on + strand at 34.001 kb on + strand at 34.001 kb on + strand at 34.002 kb on - strand at 34.002 kb on - strand at 34.002 kb on - strand at 34.002 kb on - strand at 34.002 kb on - strand at 34.002 kb on - strand at 34.092 kb on + strand, within Rru_B0036 at 34.092 kb on + strand, within Rru_B0036 at 34.092 kb on + strand, within Rru_B0036 at 34.093 kb on - strand, within Rru_B0036 at 34.121 kb on + strand, within Rru_B0036 at 34.121 kb on + strand, within Rru_B0036 at 34.121 kb on + strand, within Rru_B0036 at 34.455 kb on + strand, within Rru_B0036 at 34.456 kb on - strand, within Rru_B0036 at 34.512 kb on + strand, within Rru_B0036 at 34.512 kb on + strand, within Rru_B0036 at 34.512 kb on + strand, within Rru_B0036 at 34.512 kb on + strand, within Rru_B0036 at 34.512 kb on + strand, within Rru_B0036 at 34.512 kb on + strand, within Rru_B0036 at 34.512 kb on + strand, within Rru_B0036 at 34.512 kb on + strand, within Rru_B0036 at 34.512 kb on + strand, within Rru_B0036 at 34.512 kb on + strand, within Rru_B0036 at 34.512 kb on + strand, within Rru_B0036 at 34.512 kb on + strand, within Rru_B0036 at 34.512 kb on + strand, within Rru_B0036 at 34.512 kb on + strand, within Rru_B0036 at 34.512 kb on + strand, within Rru_B0036 at 34.512 kb on + strand, within Rru_B0036 at 34.512 kb on + strand, within Rru_B0036 at 34.512 kb on + strand, within Rru_B0036 at 34.512 kb on + strand, within Rru_B0036 at 34.512 kb on + strand, within Rru_B0036 at 34.512 kb on + strand, within Rru_B0036 at 34.513 kb on - strand, within Rru_B0036 at 34.513 kb on - strand, within Rru_B0036 at 34.513 kb on - strand, within Rru_B0036 at 34.513 kb on - strand, within Rru_B0036 at 34.513 kb on - strand, within Rru_B0036 at 34.513 kb on - strand, within Rru_B0036 at 34.513 kb on - strand, within Rru_B0036 at 34.513 kb on - strand, within Rru_B0036 at 34.513 kb on - strand, within Rru_B0036 at 34.513 kb on - strand, within Rru_B0036 at 34.513 kb on - strand, within Rru_B0036 at 34.513 kb on - strand, within Rru_B0036 at 34.513 kb on - strand, within Rru_B0036 at 34.513 kb on - strand, within Rru_B0036 at 34.513 kb on - strand, within Rru_B0036 at 34.513 kb on - strand, within Rru_B0036 at 34.513 kb on - strand, within Rru_B0036 at 34.513 kb on - strand, within Rru_B0036 at 34.513 kb on - strand, within Rru_B0036 at 34.514 kb on + strand, within Rru_B0036 at 34.514 kb on + strand, within Rru_B0036 at 34.514 kb on + strand, within Rru_B0036 at 34.514 kb on + strand, within Rru_B0036 at 34.514 kb on + strand, within Rru_B0036 at 34.514 kb on + strand, within Rru_B0036 at 34.515 kb on - strand, within Rru_B0036 at 34.515 kb on - strand, within Rru_B0036 at 34.515 kb on - strand, within Rru_B0036 at 34.515 kb on - strand, within Rru_B0036 at 34.515 kb on - strand, within Rru_B0036 at 34.515 kb on - strand, within Rru_B0036 at 34.607 kb on + strand, within Rru_B0036 at 34.625 kb on + strand, within Rru_B0036 at 34.746 kb on + strand, within Rru_B0036 at 34.746 kb on + strand, within Rru_B0036 at 34.746 kb on + strand, within Rru_B0036 at 34.747 kb on - strand, within Rru_B0036 at 34.747 kb on - strand, within Rru_B0036 at 34.747 kb on - strand, within Rru_B0036 at 34.747 kb on - strand, within Rru_B0036 at 34.748 kb on + strand, within Rru_B0036 at 34.748 kb on + strand, within Rru_B0036 at 34.749 kb on - strand, within Rru_B0036 at 34.749 kb on - strand, within Rru_B0036 at 34.749 kb on - strand, within Rru_B0036 at 34.749 kb on - strand, within Rru_B0036 at 34.749 kb on - strand, within Rru_B0036 at 34.749 kb on - strand, within Rru_B0036 at 34.749 kb on - strand, within Rru_B0036 at 34.749 kb on - strand, within Rru_B0036 at 34.781 kb on + strand, within Rru_B0036 at 34.781 kb on + strand, within Rru_B0036 at 34.782 kb on - strand, within Rru_B0036 at 34.949 kb on + strand, within Rru_B0036 at 35.214 kb on - strand at 35.278 kb on + strand at 35.279 kb on - strand at 35.279 kb on - strand at 35.279 kb on - strand at 35.304 kb on - strand at 35.305 kb on + strand at 35.306 kb on - strand at 35.306 kb on - strand at 35.334 kb on - strand at 35.359 kb on - strand at 35.371 kb on + strand at 35.371 kb on + strand at 35.372 kb on - strand at 35.372 kb on - strand at 35.372 kb on - strand at 35.372 kb on - strand at 35.374 kb on + strand at 35.374 kb on + strand at 35.374 kb on + strand at 35.374 kb on + strand at 35.375 kb on - strand at 35.375 kb on - strand at 35.375 kb on - strand at 35.375 kb on - strand at 35.375 kb on - strand at 35.375 kb on - strand at 35.479 kb on + strand at 35.480 kb on - strand at 35.480 kb on - strand at 35.480 kb on - strand at 35.480 kb on - strand at 35.508 kb on - strand at 35.528 kb on + strand at 35.540 kb on + strand at 35.541 kb on - strand at 35.541 kb on - strand at 35.603 kb on + strand at 35.615 kb on + strand at 35.630 kb on + strand, within Rru_B0037 at 35.630 kb on + strand, within Rru_B0037 at 35.636 kb on + strand, within Rru_B0037 at 35.636 kb on + strand, within Rru_B0037 at 35.720 kb on + strand, within Rru_B0037 at 35.720 kb on + strand, within Rru_B0037 at 35.738 kb on + strand, within Rru_B0037 at 35.767 kb on + strand, within Rru_B0037 at 35.767 kb on + strand, within Rru_B0037 at 35.767 kb on + strand, within Rru_B0037 at 35.767 kb on + strand, within Rru_B0037 at 35.767 kb on + strand, within Rru_B0037 at 35.767 kb on + strand, within Rru_B0037 at 35.768 kb on - strand, within Rru_B0037 at 35.768 kb on - strand, within Rru_B0037 at 35.768 kb on - strand, within Rru_B0037 at 35.885 kb on + strand, within Rru_B0037 at 35.885 kb on + strand, within Rru_B0037 at 35.912 kb on + strand, within Rru_B0037 at 35.912 kb on + strand, within Rru_B0037 at 35.912 kb on + strand, within Rru_B0037 at 35.912 kb on + strand, within Rru_B0037 at 35.913 kb on - strand, within Rru_B0037 at 35.913 kb on - strand, within Rru_B0037 at 35.913 kb on - strand, within Rru_B0037 at 35.913 kb on - strand, within Rru_B0037 at 35.939 kb on + strand, within Rru_B0037 at 35.939 kb on + strand, within Rru_B0037 at 35.939 kb on + strand, within Rru_B0037 at 35.939 kb on + strand, within Rru_B0037 at 35.940 kb on - strand, within Rru_B0037 at 35.940 kb on - strand, within Rru_B0037 at 36.078 kb on + strand, within Rru_B0037 at 36.078 kb on + strand, within Rru_B0037 at 36.078 kb on + strand, within Rru_B0037 at 36.079 kb on - strand, within Rru_B0037 at 36.079 kb on - strand, within Rru_B0037 at 36.079 kb on - strand, within Rru_B0037 at 36.079 kb on - strand, within Rru_B0037 at 36.079 kb on - strand, within Rru_B0037 at 36.079 kb on - strand, within Rru_B0037
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 18 uM remove 33,028 + Rru_B0033 0.77 -0.3 33,029 - Rru_B0033 0.77 +0.4 33,029 - Rru_B0033 0.77 -0.6 33,029 - Rru_B0033 0.77 +2.2 33,029 - Rru_B0033 0.77 -0.2 33,029 - Rru_B0033 0.77 -0.6 33,201 - +1.9 33,247 + -0.6 33,248 - -0.6 33,271 + +0.4 33,273 + -1.6 33,275 + -0.6 33,275 + +1.6 33,275 + -0.6 33,276 - -1.6 33,276 - -1.4 33,276 - -0.6 33,278 + -0.6 33,285 + +0.3 33,286 - -0.6 33,287 + +2.4 33,288 - +0.3 33,568 - -0.6 33,672 + Rru_B0035 0.36 -0.6 33,672 + Rru_B0035 0.36 -2.2 33,672 + Rru_B0035 0.36 -0.6 33,672 + Rru_B0035 0.36 -0.6 33,673 - Rru_B0035 0.37 -0.6 33,673 - Rru_B0035 0.37 -1.6 33,674 + Rru_B0035 0.37 -0.6 33,674 + Rru_B0035 0.37 +0.2 33,674 + Rru_B0035 0.37 -1.6 33,674 + Rru_B0035 0.37 -0.6 33,674 + Rru_B0035 0.37 -0.0 33,674 + Rru_B0035 0.37 -0.6 33,675 - Rru_B0035 0.37 +0.6 33,675 - Rru_B0035 0.37 +0.9 33,675 - Rru_B0035 0.37 -0.4 33,675 - Rru_B0035 0.37 -0.6 33,675 - Rru_B0035 0.37 -1.6 33,675 - Rru_B0035 0.37 -0.6 33,675 - Rru_B0035 0.37 -0.6 33,675 - Rru_B0035 0.37 -2.2 33,675 - Rru_B0035 0.37 +0.2 33,675 - Rru_B0035 0.37 -0.3 33,675 - Rru_B0035 0.37 -1.6 33,708 + Rru_B0035 0.46 -0.2 33,708 + Rru_B0035 0.46 -2.6 33,708 + Rru_B0035 0.46 +0.7 33,709 - Rru_B0035 0.46 +0.3 33,709 - Rru_B0035 0.46 +1.1 33,709 - Rru_B0035 0.46 -1.6 33,709 - Rru_B0035 0.46 -0.6 33,714 + Rru_B0035 0.47 +0.5 33,714 + Rru_B0035 0.47 -0.6 33,714 + Rru_B0035 0.47 -0.6 33,715 - Rru_B0035 0.48 +0.0 33,715 - Rru_B0035 0.48 +0.4 33,715 - Rru_B0035 0.48 -0.6 33,715 - Rru_B0035 0.48 -0.6 33,863 + Rru_B0035 0.86 -0.2 33,863 + Rru_B0035 0.86 -0.6 33,863 + Rru_B0035 0.86 +0.6 33,863 + Rru_B0035 0.86 -1.6 33,863 + Rru_B0035 0.86 -0.6 33,864 - Rru_B0035 0.86 -0.6 33,864 - Rru_B0035 0.86 +0.0 33,864 - Rru_B0035 0.86 -0.6 33,928 + -0.6 33,928 + -0.3 33,928 + +1.0 33,929 - -0.2 33,929 - +0.8 33,930 + -0.6 33,930 + -0.4 33,930 + -0.6 33,931 - +0.5 33,931 - -0.6 33,931 - -0.1 34,001 + +1.2 34,001 + +1.0 34,001 + +0.5 34,001 + -1.6 34,001 + -0.6 34,002 - +0.6 34,002 - -0.0 34,002 - -1.6 34,002 - -0.1 34,002 - +0.5 34,002 - -1.7 34,092 + Rru_B0036 0.13 +1.2 34,092 + Rru_B0036 0.13 -0.6 34,092 + Rru_B0036 0.13 -1.2 34,093 - Rru_B0036 0.13 -0.6 34,121 + Rru_B0036 0.15 +0.0 34,121 + Rru_B0036 0.15 +0.6 34,121 + Rru_B0036 0.15 -0.6 34,455 + Rru_B0036 0.44 -1.6 34,456 - Rru_B0036 0.44 +0.5 34,512 + Rru_B0036 0.49 -0.6 34,512 + Rru_B0036 0.49 +0.9 34,512 + Rru_B0036 0.49 +0.2 34,512 + Rru_B0036 0.49 +0.1 34,512 + Rru_B0036 0.49 -0.6 34,512 + Rru_B0036 0.49 -0.6 34,512 + Rru_B0036 0.49 -0.0 34,512 + Rru_B0036 0.49 +0.6 34,512 + Rru_B0036 0.49 +0.4 34,512 + Rru_B0036 0.49 +0.5 34,512 + Rru_B0036 0.49 +0.0 34,512 + Rru_B0036 0.49 -0.6 34,512 + Rru_B0036 0.49 +0.5 34,512 + Rru_B0036 0.49 +0.6 34,512 + Rru_B0036 0.49 -0.6 34,512 + Rru_B0036 0.49 -0.6 34,512 + Rru_B0036 0.49 -0.6 34,512 + Rru_B0036 0.49 +0.1 34,512 + Rru_B0036 0.49 -0.6 34,512 + Rru_B0036 0.49 +0.6 34,512 + Rru_B0036 0.49 +1.5 34,513 - Rru_B0036 0.49 +1.1 34,513 - Rru_B0036 0.49 +0.1 34,513 - Rru_B0036 0.49 +0.7 34,513 - Rru_B0036 0.49 -1.6 34,513 - Rru_B0036 0.49 -0.6 34,513 - Rru_B0036 0.49 +0.8 34,513 - Rru_B0036 0.49 +0.4 34,513 - Rru_B0036 0.49 -0.6 34,513 - Rru_B0036 0.49 +0.2 34,513 - Rru_B0036 0.49 -0.6 34,513 - Rru_B0036 0.49 -0.6 34,513 - Rru_B0036 0.49 -0.6 34,513 - Rru_B0036 0.49 +0.3 34,513 - Rru_B0036 0.49 -0.6 34,513 - Rru_B0036 0.49 -0.6 34,513 - Rru_B0036 0.49 +0.5 34,513 - Rru_B0036 0.49 -0.6 34,513 - Rru_B0036 0.49 -0.6 34,513 - Rru_B0036 0.49 -0.3 34,514 + Rru_B0036 0.49 -0.6 34,514 + Rru_B0036 0.49 +0.3 34,514 + Rru_B0036 0.49 +0.6 34,514 + Rru_B0036 0.49 -0.6 34,514 + Rru_B0036 0.49 -0.6 34,514 + Rru_B0036 0.49 -0.6 34,515 - Rru_B0036 0.49 -0.6 34,515 - Rru_B0036 0.49 +0.2 34,515 - Rru_B0036 0.49 +0.4 34,515 - Rru_B0036 0.49 -0.6 34,515 - Rru_B0036 0.49 +1.9 34,515 - Rru_B0036 0.49 +0.6 34,607 + Rru_B0036 0.57 -1.6 34,625 + Rru_B0036 0.58 -0.6 34,746 + Rru_B0036 0.69 -2.2 34,746 + Rru_B0036 0.69 -0.6 34,746 + Rru_B0036 0.69 -0.2 34,747 - Rru_B0036 0.69 -0.3 34,747 - Rru_B0036 0.69 -1.3 34,747 - Rru_B0036 0.69 -0.6 34,747 - Rru_B0036 0.69 +0.5 34,748 + Rru_B0036 0.69 +0.7 34,748 + Rru_B0036 0.69 +0.5 34,749 - Rru_B0036 0.69 -1.6 34,749 - Rru_B0036 0.69 -0.1 34,749 - Rru_B0036 0.69 -0.7 34,749 - Rru_B0036 0.69 -0.5 34,749 - Rru_B0036 0.69 -0.6 34,749 - Rru_B0036 0.69 -0.6 34,749 - Rru_B0036 0.69 +0.2 34,749 - Rru_B0036 0.69 -1.0 34,781 + Rru_B0036 0.72 +0.6 34,781 + Rru_B0036 0.72 -0.6 34,782 - Rru_B0036 0.72 -0.5 34,949 + Rru_B0036 0.86 +2.0 35,214 - +0.4 35,278 + +2.6 35,279 - -1.6 35,279 - +0.1 35,279 - -0.6 35,304 - -0.6 35,305 + -0.1 35,306 - -0.5 35,306 - -1.6 35,334 - +3.0 35,359 - -1.6 35,371 + -2.2 35,371 + -0.1 35,372 - -0.6 35,372 - -2.2 35,372 - -0.6 35,372 - -1.6 35,374 + -0.6 35,374 + -3.2 35,374 + -2.2 35,374 + -0.4 35,375 - -0.6 35,375 - -0.6 35,375 - +2.0 35,375 - -0.6 35,375 - -0.6 35,375 - -2.2 35,479 + -0.0 35,480 - -0.6 35,480 - -1.6 35,480 - +2.9 35,480 - -0.6 35,508 - -0.6 35,528 + +0.2 35,540 + -1.6 35,541 - +3.5 35,541 - +2.6 35,603 + -0.7 35,615 + -1.6 35,630 + Rru_B0037 0.10 -0.8 35,630 + Rru_B0037 0.10 -0.6 35,636 + Rru_B0037 0.11 -0.8 35,636 + Rru_B0037 0.11 -0.8 35,720 + Rru_B0037 0.14 -0.3 35,720 + Rru_B0037 0.14 +0.2 35,738 + Rru_B0037 0.15 +0.1 35,767 + Rru_B0037 0.16 -1.6 35,767 + Rru_B0037 0.16 -0.6 35,767 + Rru_B0037 0.16 -0.6 35,767 + Rru_B0037 0.16 -3.0 35,767 + Rru_B0037 0.16 -2.2 35,767 + Rru_B0037 0.16 +0.0 35,768 - Rru_B0037 0.16 +2.7 35,768 - Rru_B0037 0.16 +1.4 35,768 - Rru_B0037 0.16 +1.9 35,885 + Rru_B0037 0.21 -0.6 35,885 + Rru_B0037 0.21 -0.6 35,912 + Rru_B0037 0.22 -0.6 35,912 + Rru_B0037 0.22 +0.0 35,912 + Rru_B0037 0.22 -0.3 35,912 + Rru_B0037 0.22 +0.7 35,913 - Rru_B0037 0.22 +1.4 35,913 - Rru_B0037 0.22 +0.8 35,913 - Rru_B0037 0.22 -0.6 35,913 - Rru_B0037 0.22 +0.4 35,939 + Rru_B0037 0.23 -0.9 35,939 + Rru_B0037 0.23 -0.7 35,939 + Rru_B0037 0.23 +0.5 35,939 + Rru_B0037 0.23 -0.9 35,940 - Rru_B0037 0.23 +1.2 35,940 - Rru_B0037 0.23 +1.5 36,078 + Rru_B0037 0.28 -0.6 36,078 + Rru_B0037 0.28 +0.5 36,078 + Rru_B0037 0.28 -0.4 36,079 - Rru_B0037 0.28 -0.6 36,079 - Rru_B0037 0.28 -1.6 36,079 - Rru_B0037 0.28 -0.6 36,079 - Rru_B0037 0.28 -1.6 36,079 - Rru_B0037 0.28 +0.1 36,079 - Rru_B0037 0.28 +0.4
Or see this region's nucleotide sequence