Experiment: Minimal media pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_29410 and AO356_29415 are separated by 88 nucleotides AO356_29415 and AO356_29420 are separated by 135 nucleotides AO356_29420 and AO356_29425 are separated by 198 nucleotides AO356_29425 and AO356_29430 are separated by 35 nucleotides
AO356_29410: AO356_29410 - hypothetical protein, at 6,842,595 to 6,842,975
_29410
AO356_29415: AO356_29415 - transketolase, at 6,843,064 to 6,843,522
_29415
AO356_29420: AO356_29420 - 1-aminocyclopropane-1-carboxylate deaminase, at 6,843,658 to 6,844,674
_29420
AO356_29425: AO356_29425 - AsnC family transcriptional regulator, at 6,844,873 to 6,845,382
_29425
AO356_29430: AO356_29430 - histidine kinase, at 6,845,418 to 6,849,140
_29430
Position (kb)
6843
6844
6845 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 6842.955 kb on - strand at 6842.955 kb on - strand at 6843.018 kb on - strand at 6843.380 kb on + strand, within AO356_29415 at 6843.380 kb on + strand, within AO356_29415 at 6843.404 kb on - strand, within AO356_29415 at 6843.404 kb on - strand, within AO356_29415 at 6843.431 kb on + strand, within AO356_29415 at 6843.432 kb on - strand, within AO356_29415 at 6843.432 kb on - strand, within AO356_29415 at 6843.596 kb on + strand at 6843.639 kb on + strand at 6843.684 kb on - strand at 6843.720 kb on - strand at 6843.720 kb on - strand at 6843.853 kb on - strand, within AO356_29420 at 6844.176 kb on - strand, within AO356_29420 at 6844.297 kb on + strand, within AO356_29420 at 6844.297 kb on + strand, within AO356_29420 at 6844.297 kb on + strand, within AO356_29420 at 6844.297 kb on + strand, within AO356_29420 at 6844.506 kb on - strand, within AO356_29420 at 6844.656 kb on + strand at 6844.656 kb on + strand at 6844.771 kb on + strand at 6845.415 kb on + strand at 6845.427 kb on - strand at 6845.450 kb on + strand at 6845.450 kb on + strand at 6845.451 kb on - strand at 6845.459 kb on + strand at 6845.591 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Minimal media pH6 remove 6,842,955 - +0.4 6,842,955 - -0.3 6,843,018 - +0.8 6,843,380 + AO356_29415 0.69 -1.4 6,843,380 + AO356_29415 0.69 +1.3 6,843,404 - AO356_29415 0.74 -0.2 6,843,404 - AO356_29415 0.74 +0.1 6,843,431 + AO356_29415 0.80 -0.3 6,843,432 - AO356_29415 0.80 -0.5 6,843,432 - AO356_29415 0.80 -0.1 6,843,596 + +0.1 6,843,639 + +0.3 6,843,684 - +0.2 6,843,720 - +0.3 6,843,720 - +0.5 6,843,853 - AO356_29420 0.19 -0.2 6,844,176 - AO356_29420 0.51 +0.3 6,844,297 + AO356_29420 0.63 -0.9 6,844,297 + AO356_29420 0.63 -0.5 6,844,297 + AO356_29420 0.63 -2.8 6,844,297 + AO356_29420 0.63 -0.9 6,844,506 - AO356_29420 0.83 +0.2 6,844,656 + -1.9 6,844,656 + -2.6 6,844,771 + -2.8 6,845,415 + +0.2 6,845,427 - +0.8 6,845,450 + -0.5 6,845,450 + +1.4 6,845,451 - +1.0 6,845,459 + -0.2 6,845,591 + -1.1
Or see this region's nucleotide sequence