Experiment: Minimal media pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_27185 and AO356_27190 are separated by 23 nucleotides AO356_27190 and AO356_27195 overlap by 4 nucleotides AO356_27195 and AO356_27200 are separated by 122 nucleotides AO356_27200 and AO356_27205 are separated by 16 nucleotides
AO356_27185: AO356_27185 - hypothetical protein, at 6,195,986 to 6,197,503
_27185
AO356_27190: AO356_27190 - hypothetical protein, at 6,197,527 to 6,198,498
_27190
AO356_27195: AO356_27195 - hypothetical protein, at 6,198,495 to 6,199,598
_27195
AO356_27200: AO356_27200 - hypothetical protein, at 6,199,721 to 6,199,966
_27200
AO356_27205: AO356_27205 - hypothetical protein, at 6,199,983 to 6,200,762
_27205
Position (kb)
6198
6199
6200 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 6197.566 kb on - strand at 6197.566 kb on - strand at 6197.597 kb on - strand at 6197.597 kb on - strand at 6197.597 kb on - strand at 6197.625 kb on - strand, within AO356_27190 at 6197.678 kb on - strand, within AO356_27190 at 6197.788 kb on + strand, within AO356_27190 at 6197.788 kb on + strand, within AO356_27190 at 6197.799 kb on - strand, within AO356_27190 at 6197.799 kb on - strand, within AO356_27190 at 6197.809 kb on - strand, within AO356_27190 at 6197.823 kb on + strand, within AO356_27190 at 6197.823 kb on + strand, within AO356_27190 at 6197.824 kb on - strand, within AO356_27190 at 6197.825 kb on + strand, within AO356_27190 at 6197.825 kb on + strand, within AO356_27190 at 6197.825 kb on + strand, within AO356_27190 at 6197.825 kb on + strand, within AO356_27190 at 6198.042 kb on + strand, within AO356_27190 at 6198.079 kb on - strand, within AO356_27190 at 6198.079 kb on - strand, within AO356_27190 at 6198.080 kb on + strand, within AO356_27190 at 6198.080 kb on + strand, within AO356_27190 at 6198.081 kb on - strand, within AO356_27190 at 6198.081 kb on - strand, within AO356_27190 at 6198.081 kb on - strand, within AO356_27190 at 6198.081 kb on - strand, within AO356_27190 at 6198.081 kb on - strand, within AO356_27190 at 6198.108 kb on - strand, within AO356_27190 at 6198.163 kb on + strand, within AO356_27190 at 6198.243 kb on + strand, within AO356_27190 at 6198.244 kb on - strand, within AO356_27190 at 6198.291 kb on - strand, within AO356_27190 at 6198.457 kb on - strand at 6198.604 kb on + strand at 6198.666 kb on + strand, within AO356_27195 at 6198.677 kb on + strand, within AO356_27195 at 6198.677 kb on + strand, within AO356_27195 at 6198.677 kb on + strand, within AO356_27195 at 6198.678 kb on - strand, within AO356_27195 at 6198.727 kb on - strand, within AO356_27195 at 6198.777 kb on + strand, within AO356_27195 at 6198.778 kb on - strand, within AO356_27195 at 6198.845 kb on - strand, within AO356_27195 at 6198.845 kb on - strand, within AO356_27195 at 6198.928 kb on - strand, within AO356_27195 at 6198.955 kb on + strand, within AO356_27195 at 6199.023 kb on + strand, within AO356_27195 at 6199.134 kb on - strand, within AO356_27195 at 6199.267 kb on + strand, within AO356_27195 at 6199.272 kb on + strand, within AO356_27195 at 6199.279 kb on - strand, within AO356_27195 at 6199.279 kb on - strand, within AO356_27195 at 6199.279 kb on - strand, within AO356_27195 at 6199.334 kb on + strand, within AO356_27195 at 6199.335 kb on - strand, within AO356_27195 at 6199.351 kb on + strand, within AO356_27195 at 6199.363 kb on + strand, within AO356_27195 at 6199.507 kb on - strand at 6199.571 kb on + strand at 6199.571 kb on + strand at 6199.572 kb on - strand at 6199.791 kb on + strand, within AO356_27200 at 6199.792 kb on - strand, within AO356_27200 at 6199.800 kb on - strand, within AO356_27200 at 6199.830 kb on + strand, within AO356_27200 at 6199.844 kb on + strand, within AO356_27200 at 6199.967 kb on - strand at 6199.967 kb on - strand at 6199.967 kb on - strand at 6200.075 kb on + strand, within AO356_27205 at 6200.075 kb on + strand, within AO356_27205 at 6200.150 kb on + strand, within AO356_27205 at 6200.150 kb on + strand, within AO356_27205 at 6200.151 kb on - strand, within AO356_27205 at 6200.185 kb on + strand, within AO356_27205 at 6200.227 kb on + strand, within AO356_27205 at 6200.227 kb on + strand, within AO356_27205 at 6200.228 kb on - strand, within AO356_27205 at 6200.252 kb on + strand, within AO356_27205 at 6200.360 kb on - strand, within AO356_27205 at 6200.378 kb on - strand, within AO356_27205 at 6200.378 kb on - strand, within AO356_27205 at 6200.455 kb on + strand, within AO356_27205 at 6200.496 kb on + strand, within AO356_27205 at 6200.564 kb on + strand, within AO356_27205 at 6200.564 kb on + strand, within AO356_27205 at 6200.565 kb on - strand, within AO356_27205 at 6200.594 kb on + strand, within AO356_27205 at 6200.594 kb on + strand, within AO356_27205
Per-strain Table
Position Strand Gene LocusTag Fraction Minimal media pH6 remove 6,197,566 - +0.1 6,197,566 - +0.4 6,197,597 - +1.1 6,197,597 - -0.5 6,197,597 - +0.0 6,197,625 - AO356_27190 0.10 +0.4 6,197,678 - AO356_27190 0.16 +0.4 6,197,788 + AO356_27190 0.27 +0.0 6,197,788 + AO356_27190 0.27 +0.3 6,197,799 - AO356_27190 0.28 +1.3 6,197,799 - AO356_27190 0.28 +1.3 6,197,809 - AO356_27190 0.29 +1.1 6,197,823 + AO356_27190 0.30 -0.1 6,197,823 + AO356_27190 0.30 -1.0 6,197,824 - AO356_27190 0.31 +1.1 6,197,825 + AO356_27190 0.31 -0.1 6,197,825 + AO356_27190 0.31 +0.9 6,197,825 + AO356_27190 0.31 +0.9 6,197,825 + AO356_27190 0.31 +0.7 6,198,042 + AO356_27190 0.53 -0.3 6,198,079 - AO356_27190 0.57 +0.4 6,198,079 - AO356_27190 0.57 +0.0 6,198,080 + AO356_27190 0.57 -0.9 6,198,080 + AO356_27190 0.57 -0.8 6,198,081 - AO356_27190 0.57 +1.1 6,198,081 - AO356_27190 0.57 +0.8 6,198,081 - AO356_27190 0.57 +0.6 6,198,081 - AO356_27190 0.57 +0.7 6,198,081 - AO356_27190 0.57 +0.1 6,198,108 - AO356_27190 0.60 +1.3 6,198,163 + AO356_27190 0.65 +0.4 6,198,243 + AO356_27190 0.74 -0.5 6,198,244 - AO356_27190 0.74 +0.5 6,198,291 - AO356_27190 0.79 -0.8 6,198,457 - +1.1 6,198,604 + +0.7 6,198,666 + AO356_27195 0.15 +0.1 6,198,677 + AO356_27195 0.16 +0.0 6,198,677 + AO356_27195 0.16 -0.2 6,198,677 + AO356_27195 0.16 -0.6 6,198,678 - AO356_27195 0.17 +1.0 6,198,727 - AO356_27195 0.21 -0.1 6,198,777 + AO356_27195 0.26 +0.5 6,198,778 - AO356_27195 0.26 -0.3 6,198,845 - AO356_27195 0.32 +0.3 6,198,845 - AO356_27195 0.32 +0.6 6,198,928 - AO356_27195 0.39 +0.2 6,198,955 + AO356_27195 0.42 -0.2 6,199,023 + AO356_27195 0.48 -0.7 6,199,134 - AO356_27195 0.58 +1.0 6,199,267 + AO356_27195 0.70 +0.7 6,199,272 + AO356_27195 0.70 +0.7 6,199,279 - AO356_27195 0.71 -0.1 6,199,279 - AO356_27195 0.71 +1.4 6,199,279 - AO356_27195 0.71 +0.2 6,199,334 + AO356_27195 0.76 -0.3 6,199,335 - AO356_27195 0.76 +0.6 6,199,351 + AO356_27195 0.78 -0.6 6,199,363 + AO356_27195 0.79 +0.6 6,199,507 - +0.7 6,199,571 + -0.1 6,199,571 + +0.2 6,199,572 - -0.5 6,199,791 + AO356_27200 0.28 +0.0 6,199,792 - AO356_27200 0.29 +0.5 6,199,800 - AO356_27200 0.32 +0.5 6,199,830 + AO356_27200 0.44 -0.2 6,199,844 + AO356_27200 0.50 +0.0 6,199,967 - +0.5 6,199,967 - -0.9 6,199,967 - -0.5 6,200,075 + AO356_27205 0.12 -2.6 6,200,075 + AO356_27205 0.12 -2.7 6,200,150 + AO356_27205 0.21 -2.0 6,200,150 + AO356_27205 0.21 -2.3 6,200,151 - AO356_27205 0.22 -1.9 6,200,185 + AO356_27205 0.26 -2.4 6,200,227 + AO356_27205 0.31 -1.7 6,200,227 + AO356_27205 0.31 -3.1 6,200,228 - AO356_27205 0.31 -2.7 6,200,252 + AO356_27205 0.34 -4.1 6,200,360 - AO356_27205 0.48 -2.8 6,200,378 - AO356_27205 0.51 -2.2 6,200,378 - AO356_27205 0.51 -2.5 6,200,455 + AO356_27205 0.61 -1.4 6,200,496 + AO356_27205 0.66 -2.9 6,200,564 + AO356_27205 0.74 -2.3 6,200,564 + AO356_27205 0.74 -3.2 6,200,565 - AO356_27205 0.75 -1.8 6,200,594 + AO356_27205 0.78 -1.5 6,200,594 + AO356_27205 0.78 -1.9
Or see this region's nucleotide sequence