Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29100

Experiment: LB 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_29090 and AO356_29095 overlap by 4 nucleotidesAO356_29095 and AO356_29100 overlap by 14 nucleotidesAO356_29100 and AO356_29105 overlap by 10 nucleotidesAO356_29105 and AO356_29110 overlap by 4 nucleotides AO356_29090: AO356_29090 - GntR family transcriptional regulator, at 6,764,003 to 6,764,734 _29090 AO356_29095: AO356_29095 - cyclase, at 6,764,731 to 6,765,516 _29095 AO356_29100: AO356_29100 - epimerase, at 6,765,503 to 6,766,510 _29100 AO356_29105: AO356_29105 - fumarylacetoacetate hydrolase, at 6,766,501 to 6,767,493 _29105 AO356_29110: AO356_29110 - cupin, at 6,767,490 to 6,768,062 _29110 Position (kb) 6765 6766 6767Strain fitness (log2 ratio) -1 0 1at 6764.939 kb on + strand, within AO356_29095at 6765.005 kb on + strand, within AO356_29095at 6765.006 kb on - strand, within AO356_29095at 6765.006 kb on - strand, within AO356_29095at 6765.013 kb on - strand, within AO356_29095at 6765.013 kb on - strand, within AO356_29095at 6765.276 kb on - strand, within AO356_29095at 6765.294 kb on + strand, within AO356_29095at 6765.295 kb on - strand, within AO356_29095at 6765.301 kb on - strand, within AO356_29095at 6765.458 kb on + strandat 6765.587 kb on + strandat 6766.078 kb on - strand, within AO356_29100at 6766.246 kb on - strand, within AO356_29100at 6767.167 kb on - strand, within AO356_29105at 6767.167 kb on - strand, within AO356_29105at 6767.167 kb on - strand, within AO356_29105

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 37C
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6,764,939 + AO356_29095 0.26 -0.3
6,765,005 + AO356_29095 0.35 +0.3
6,765,006 - AO356_29095 0.35 -0.1
6,765,006 - AO356_29095 0.35 -0.3
6,765,013 - AO356_29095 0.36 +0.7
6,765,013 - AO356_29095 0.36 -0.2
6,765,276 - AO356_29095 0.69 -0.2
6,765,294 + AO356_29095 0.72 -0.5
6,765,295 - AO356_29095 0.72 +0.5
6,765,301 - AO356_29095 0.73 +0.7
6,765,458 + +0.7
6,765,587 + -1.6
6,766,078 - AO356_29100 0.57 -0.4
6,766,246 - AO356_29100 0.74 -0.4
6,767,167 - AO356_29105 0.67 +0.1
6,767,167 - AO356_29105 0.67 +1.0
6,767,167 - AO356_29105 0.67 +0.1

Or see this region's nucleotide sequence