Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27870

Experiment: LB 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_27860 and AO356_27865 are separated by 24 nucleotidesAO356_27865 and AO356_27870 are separated by 57 nucleotidesAO356_27870 and AO356_27875 are separated by 228 nucleotidesAO356_27875 and AO356_27880 are separated by 51 nucleotides AO356_27860: AO356_27860 - hypothetical protein, at 6,359,339 to 6,361,078 _27860 AO356_27865: AO356_27865 - GNAT family acetyltransferase, at 6,361,103 to 6,361,597 _27865 AO356_27870: AO356_27870 - ATPase, at 6,361,655 to 6,362,776 _27870 AO356_27875: AO356_27875 - ketosteroid isomerase, at 6,363,005 to 6,363,346 _27875 AO356_27880: AO356_27880 - DNA-binding protein, at 6,363,398 to 6,364,114 _27880 Position (kb) 6361 6362 6363Strain fitness (log2 ratio) -1 0 1 2at 6360.702 kb on - strand, within AO356_27860at 6360.748 kb on + strand, within AO356_27860at 6360.789 kb on - strand, within AO356_27860at 6360.941 kb on - strandat 6360.999 kb on - strandat 6361.077 kb on - strandat 6361.077 kb on - strandat 6361.104 kb on + strandat 6361.105 kb on - strandat 6361.129 kb on + strandat 6361.129 kb on + strandat 6361.129 kb on + strandat 6361.129 kb on + strandat 6361.130 kb on - strandat 6361.130 kb on - strandat 6361.130 kb on - strandat 6361.252 kb on + strand, within AO356_27865at 6361.509 kb on + strand, within AO356_27865at 6361.557 kb on + strandat 6361.619 kb on - strandat 6361.649 kb on + strandat 6361.731 kb on + strandat 6361.731 kb on + strandat 6361.743 kb on + strandat 6361.743 kb on + strandat 6361.744 kb on - strandat 6361.744 kb on - strandat 6361.744 kb on - strandat 6361.797 kb on + strand, within AO356_27870at 6361.797 kb on + strand, within AO356_27870at 6361.797 kb on + strand, within AO356_27870at 6362.311 kb on - strand, within AO356_27870at 6362.578 kb on - strand, within AO356_27870at 6362.628 kb on + strand, within AO356_27870at 6362.628 kb on + strand, within AO356_27870at 6362.629 kb on - strand, within AO356_27870at 6362.629 kb on - strand, within AO356_27870at 6362.809 kb on + strandat 6362.809 kb on + strandat 6362.863 kb on + strandat 6362.863 kb on + strandat 6362.863 kb on + strandat 6362.864 kb on - strandat 6362.864 kb on - strandat 6363.007 kb on - strandat 6363.058 kb on + strand, within AO356_27875at 6363.059 kb on - strand, within AO356_27875at 6363.060 kb on + strand, within AO356_27875at 6363.304 kb on - strand, within AO356_27875at 6363.349 kb on + strandat 6363.350 kb on - strandat 6363.350 kb on - strandat 6363.383 kb on + strandat 6363.383 kb on + strandat 6363.383 kb on + strandat 6363.383 kb on + strandat 6363.384 kb on - strandat 6363.384 kb on - strandat 6363.384 kb on - strandat 6363.727 kb on - strand, within AO356_27880

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 37C
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6,360,702 - AO356_27860 0.78 -0.3
6,360,748 + AO356_27860 0.81 -0.6
6,360,789 - AO356_27860 0.83 +0.2
6,360,941 - +0.3
6,360,999 - +0.6
6,361,077 - +0.2
6,361,077 - -1.0
6,361,104 + +0.2
6,361,105 - -0.7
6,361,129 + +0.8
6,361,129 + -0.2
6,361,129 + -0.1
6,361,129 + +0.1
6,361,130 - -0.7
6,361,130 - +0.1
6,361,130 - -0.0
6,361,252 + AO356_27865 0.30 +0.5
6,361,509 + AO356_27865 0.82 +0.4
6,361,557 + -0.3
6,361,619 - +1.3
6,361,649 + -0.5
6,361,731 + +0.7
6,361,731 + +0.2
6,361,743 + +1.9
6,361,743 + +0.9
6,361,744 - -0.4
6,361,744 - -0.0
6,361,744 - +0.4
6,361,797 + AO356_27870 0.13 +0.0
6,361,797 + AO356_27870 0.13 +0.1
6,361,797 + AO356_27870 0.13 +0.4
6,362,311 - AO356_27870 0.58 +0.6
6,362,578 - AO356_27870 0.82 -1.0
6,362,628 + AO356_27870 0.87 +2.0
6,362,628 + AO356_27870 0.87 +1.1
6,362,629 - AO356_27870 0.87 +0.1
6,362,629 - AO356_27870 0.87 +0.6
6,362,809 + -0.2
6,362,809 + -0.0
6,362,863 + -0.5
6,362,863 + +0.7
6,362,863 + -0.2
6,362,864 - +0.8
6,362,864 - -0.1
6,363,007 - +0.1
6,363,058 + AO356_27875 0.15 -0.5
6,363,059 - AO356_27875 0.16 -0.2
6,363,060 + AO356_27875 0.16 -0.1
6,363,304 - AO356_27875 0.87 +0.6
6,363,349 + -0.5
6,363,350 - -0.3
6,363,350 - +0.4
6,363,383 + +0.1
6,363,383 + -0.1
6,363,383 + +0.0
6,363,383 + +0.7
6,363,384 - -0.3
6,363,384 - +0.9
6,363,384 - +1.3
6,363,727 - AO356_27880 0.46 -0.1

Or see this region's nucleotide sequence