Experiment: LB 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_27860 and AO356_27865 are separated by 24 nucleotides AO356_27865 and AO356_27870 are separated by 57 nucleotides AO356_27870 and AO356_27875 are separated by 228 nucleotides AO356_27875 and AO356_27880 are separated by 51 nucleotides
AO356_27860: AO356_27860 - hypothetical protein, at 6,359,339 to 6,361,078
_27860
AO356_27865: AO356_27865 - GNAT family acetyltransferase, at 6,361,103 to 6,361,597
_27865
AO356_27870: AO356_27870 - ATPase, at 6,361,655 to 6,362,776
_27870
AO356_27875: AO356_27875 - ketosteroid isomerase, at 6,363,005 to 6,363,346
_27875
AO356_27880: AO356_27880 - DNA-binding protein, at 6,363,398 to 6,364,114
_27880
Position (kb)
6361
6362
6363 Strain fitness (log2 ratio)
-1
0
1
2 at 6360.702 kb on - strand, within AO356_27860 at 6360.748 kb on + strand, within AO356_27860 at 6360.789 kb on - strand, within AO356_27860 at 6360.941 kb on - strand at 6360.999 kb on - strand at 6361.077 kb on - strand at 6361.077 kb on - strand at 6361.104 kb on + strand at 6361.105 kb on - strand at 6361.129 kb on + strand at 6361.129 kb on + strand at 6361.129 kb on + strand at 6361.129 kb on + strand at 6361.130 kb on - strand at 6361.130 kb on - strand at 6361.130 kb on - strand at 6361.252 kb on + strand, within AO356_27865 at 6361.509 kb on + strand, within AO356_27865 at 6361.557 kb on + strand at 6361.619 kb on - strand at 6361.649 kb on + strand at 6361.731 kb on + strand at 6361.731 kb on + strand at 6361.743 kb on + strand at 6361.743 kb on + strand at 6361.744 kb on - strand at 6361.744 kb on - strand at 6361.744 kb on - strand at 6361.797 kb on + strand, within AO356_27870 at 6361.797 kb on + strand, within AO356_27870 at 6361.797 kb on + strand, within AO356_27870 at 6362.311 kb on - strand, within AO356_27870 at 6362.578 kb on - strand, within AO356_27870 at 6362.628 kb on + strand, within AO356_27870 at 6362.628 kb on + strand, within AO356_27870 at 6362.629 kb on - strand, within AO356_27870 at 6362.629 kb on - strand, within AO356_27870 at 6362.809 kb on + strand at 6362.809 kb on + strand at 6362.863 kb on + strand at 6362.863 kb on + strand at 6362.863 kb on + strand at 6362.864 kb on - strand at 6362.864 kb on - strand at 6363.007 kb on - strand at 6363.058 kb on + strand, within AO356_27875 at 6363.059 kb on - strand, within AO356_27875 at 6363.060 kb on + strand, within AO356_27875 at 6363.304 kb on - strand, within AO356_27875 at 6363.349 kb on + strand at 6363.350 kb on - strand at 6363.350 kb on - strand at 6363.383 kb on + strand at 6363.383 kb on + strand at 6363.383 kb on + strand at 6363.383 kb on + strand at 6363.384 kb on - strand at 6363.384 kb on - strand at 6363.384 kb on - strand at 6363.727 kb on - strand, within AO356_27880
Per-strain Table
Position Strand Gene LocusTag Fraction LB 37C remove 6,360,702 - AO356_27860 0.78 -0.3 6,360,748 + AO356_27860 0.81 -0.6 6,360,789 - AO356_27860 0.83 +0.2 6,360,941 - +0.3 6,360,999 - +0.6 6,361,077 - +0.2 6,361,077 - -1.0 6,361,104 + +0.2 6,361,105 - -0.7 6,361,129 + +0.8 6,361,129 + -0.2 6,361,129 + -0.1 6,361,129 + +0.1 6,361,130 - -0.7 6,361,130 - +0.1 6,361,130 - -0.0 6,361,252 + AO356_27865 0.30 +0.5 6,361,509 + AO356_27865 0.82 +0.4 6,361,557 + -0.3 6,361,619 - +1.3 6,361,649 + -0.5 6,361,731 + +0.7 6,361,731 + +0.2 6,361,743 + +1.9 6,361,743 + +0.9 6,361,744 - -0.4 6,361,744 - -0.0 6,361,744 - +0.4 6,361,797 + AO356_27870 0.13 +0.0 6,361,797 + AO356_27870 0.13 +0.1 6,361,797 + AO356_27870 0.13 +0.4 6,362,311 - AO356_27870 0.58 +0.6 6,362,578 - AO356_27870 0.82 -1.0 6,362,628 + AO356_27870 0.87 +2.0 6,362,628 + AO356_27870 0.87 +1.1 6,362,629 - AO356_27870 0.87 +0.1 6,362,629 - AO356_27870 0.87 +0.6 6,362,809 + -0.2 6,362,809 + -0.0 6,362,863 + -0.5 6,362,863 + +0.7 6,362,863 + -0.2 6,362,864 - +0.8 6,362,864 - -0.1 6,363,007 - +0.1 6,363,058 + AO356_27875 0.15 -0.5 6,363,059 - AO356_27875 0.16 -0.2 6,363,060 + AO356_27875 0.16 -0.1 6,363,304 - AO356_27875 0.87 +0.6 6,363,349 + -0.5 6,363,350 - -0.3 6,363,350 - +0.4 6,363,383 + +0.1 6,363,383 + -0.1 6,363,383 + +0.0 6,363,383 + +0.7 6,363,384 - -0.3 6,363,384 - +0.9 6,363,384 - +1.3 6,363,727 - AO356_27880 0.46 -0.1
Or see this region's nucleotide sequence