Experiment: LB 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_27750 and AO356_27755 are separated by 184 nucleotides AO356_27755 and AO356_27760 are separated by 129 nucleotides AO356_27760 and AO356_27765 overlap by 4 nucleotides AO356_27765 and AO356_27770 are separated by 70 nucleotides AO356_27770 and AO356_27775 overlap by 4 nucleotides
AO356_27750: AO356_27750 - dienelactone hydrolase, at 6,336,703 to 6,337,740
_27750
AO356_27755: AO356_27755 - FMN-dependent NADH-azoreductase, at 6,337,925 to 6,338,533
_27755
AO356_27760: AO356_27760 - LysR family transcriptional regulator, at 6,338,663 to 6,339,571
_27760
AO356_27765: AO356_27765 - hypothetical protein, at 6,339,568 to 6,339,918
_27765
AO356_27770: AO356_27770 - hypothetical protein, at 6,339,989 to 6,340,417
_27770
AO356_27775: AO356_27775 - UDP pyrophosphate phosphatase, at 6,340,414 to 6,341,244
_27775
Position (kb)
6338
6339
6340 Strain fitness (log2 ratio)
-1
0
1 at 6337.875 kb on - strand at 6337.915 kb on + strand at 6337.978 kb on + strand at 6337.978 kb on + strand at 6337.979 kb on - strand at 6337.979 kb on - strand at 6338.067 kb on + strand, within AO356_27755 at 6338.067 kb on + strand, within AO356_27755 at 6338.067 kb on + strand, within AO356_27755 at 6338.204 kb on - strand, within AO356_27755 at 6338.247 kb on + strand, within AO356_27755 at 6338.248 kb on - strand, within AO356_27755 at 6338.248 kb on - strand, within AO356_27755 at 6338.309 kb on - strand, within AO356_27755 at 6338.309 kb on - strand, within AO356_27755 at 6338.322 kb on + strand, within AO356_27755 at 6338.322 kb on + strand, within AO356_27755 at 6338.322 kb on + strand, within AO356_27755 at 6338.323 kb on - strand, within AO356_27755 at 6338.323 kb on - strand, within AO356_27755 at 6338.418 kb on + strand, within AO356_27755 at 6338.418 kb on + strand, within AO356_27755 at 6338.419 kb on - strand, within AO356_27755 at 6338.533 kb on + strand at 6338.534 kb on - strand at 6338.610 kb on - strand at 6338.620 kb on - strand at 6338.684 kb on + strand at 6338.684 kb on + strand at 6338.684 kb on + strand at 6338.685 kb on - strand at 6338.685 kb on - strand at 6338.685 kb on - strand at 6338.685 kb on - strand at 6338.687 kb on + strand at 6338.687 kb on + strand at 6338.687 kb on + strand at 6338.688 kb on - strand at 6338.688 kb on - strand at 6338.855 kb on + strand, within AO356_27760 at 6339.015 kb on - strand, within AO356_27760 at 6339.396 kb on - strand, within AO356_27760 at 6339.559 kb on + strand at 6339.560 kb on - strand at 6339.567 kb on + strand at 6339.631 kb on + strand, within AO356_27765 at 6339.631 kb on + strand, within AO356_27765 at 6339.632 kb on - strand, within AO356_27765 at 6339.885 kb on - strand at 6339.916 kb on + strand at 6339.917 kb on - strand at 6339.991 kb on - strand at 6340.056 kb on - strand, within AO356_27770 at 6340.056 kb on - strand, within AO356_27770 at 6340.221 kb on + strand, within AO356_27770 at 6340.222 kb on - strand, within AO356_27770 at 6340.508 kb on + strand, within AO356_27775
Per-strain Table
Position Strand Gene LocusTag Fraction LB 37C remove 6,337,875 - -0.7 6,337,915 + -0.2 6,337,978 + -0.4 6,337,978 + +0.6 6,337,979 - -0.8 6,337,979 - +1.4 6,338,067 + AO356_27755 0.23 +0.2 6,338,067 + AO356_27755 0.23 +0.5 6,338,067 + AO356_27755 0.23 -0.6 6,338,204 - AO356_27755 0.46 +0.6 6,338,247 + AO356_27755 0.53 +1.7 6,338,248 - AO356_27755 0.53 -1.2 6,338,248 - AO356_27755 0.53 -0.8 6,338,309 - AO356_27755 0.63 +0.5 6,338,309 - AO356_27755 0.63 -0.0 6,338,322 + AO356_27755 0.65 +0.7 6,338,322 + AO356_27755 0.65 +0.5 6,338,322 + AO356_27755 0.65 +1.0 6,338,323 - AO356_27755 0.65 +0.3 6,338,323 - AO356_27755 0.65 -0.3 6,338,418 + AO356_27755 0.81 -0.2 6,338,418 + AO356_27755 0.81 -0.4 6,338,419 - AO356_27755 0.81 -0.2 6,338,533 + -0.1 6,338,534 - -0.6 6,338,610 - -0.1 6,338,620 - +1.5 6,338,684 + +0.4 6,338,684 + -0.5 6,338,684 + +0.1 6,338,685 - -0.5 6,338,685 - +0.5 6,338,685 - -0.2 6,338,685 - +0.1 6,338,687 + +1.2 6,338,687 + +0.3 6,338,687 + -0.5 6,338,688 - +0.2 6,338,688 - +0.2 6,338,855 + AO356_27760 0.21 -0.4 6,339,015 - AO356_27760 0.39 -0.1 6,339,396 - AO356_27760 0.81 -1.5 6,339,559 + -0.7 6,339,560 - +0.1 6,339,567 + +0.4 6,339,631 + AO356_27765 0.18 +0.5 6,339,631 + AO356_27765 0.18 -0.3 6,339,632 - AO356_27765 0.18 -0.3 6,339,885 - +0.1 6,339,916 + +0.2 6,339,917 - +0.0 6,339,991 - +0.8 6,340,056 - AO356_27770 0.16 -0.5 6,340,056 - AO356_27770 0.16 -1.5 6,340,221 + AO356_27770 0.54 -1.7 6,340,222 - AO356_27770 0.54 -0.4 6,340,508 + AO356_27775 0.11 -0.4
Or see this region's nucleotide sequence