Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_26630

Experiment: LB 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_26625 and AO356_26630 are separated by 188 nucleotidesAO356_26630 and AO356_26635 are separated by 89 nucleotidesAO356_26635 and AO356_26640 overlap by 8 nucleotides AO356_26625: AO356_26625 - DNA-binding protein, at 6,060,862 to 6,061,716 _26625 AO356_26630: AO356_26630 - XshC-Cox1 family protein, at 6,061,905 to 6,062,876 _26630 AO356_26635: AO356_26635 - hydrolase, at 6,062,966 to 6,063,751 _26635 AO356_26640: AO356_26640 - MFS transporter, at 6,063,744 to 6,065,096 _26640 Position (kb) 6061 6062 6063Strain fitness (log2 ratio) -1 0 1 2at 6061.586 kb on + strand, within AO356_26625at 6061.586 kb on + strand, within AO356_26625at 6061.766 kb on - strandat 6061.766 kb on - strandat 6061.766 kb on - strandat 6061.780 kb on + strandat 6061.781 kb on - strandat 6061.784 kb on + strandat 6061.785 kb on - strandat 6061.785 kb on - strandat 6061.785 kb on - strandat 6062.111 kb on - strand, within AO356_26630at 6062.262 kb on + strand, within AO356_26630at 6062.262 kb on + strand, within AO356_26630at 6062.785 kb on + strandat 6062.876 kb on + strandat 6062.876 kb on + strandat 6062.877 kb on - strandat 6062.926 kb on - strandat 6063.144 kb on - strand, within AO356_26635at 6063.200 kb on + strand, within AO356_26635at 6063.309 kb on - strand, within AO356_26635at 6063.590 kb on + strand, within AO356_26635at 6063.794 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 37C
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6,061,586 + AO356_26625 0.85 -0.2
6,061,586 + AO356_26625 0.85 -0.6
6,061,766 - -1.1
6,061,766 - +0.2
6,061,766 - +0.0
6,061,780 + +0.2
6,061,781 - +2.2
6,061,784 + +0.3
6,061,785 - -0.2
6,061,785 - -0.8
6,061,785 - +0.4
6,062,111 - AO356_26630 0.21 -0.7
6,062,262 + AO356_26630 0.37 -0.3
6,062,262 + AO356_26630 0.37 -0.5
6,062,785 + -0.5
6,062,876 + +0.4
6,062,876 + +0.1
6,062,877 - +0.7
6,062,926 - -1.1
6,063,144 - AO356_26635 0.23 +0.5
6,063,200 + AO356_26635 0.30 +0.6
6,063,309 - AO356_26635 0.44 +0.6
6,063,590 + AO356_26635 0.79 +1.2
6,063,794 - +0.6

Or see this region's nucleotide sequence