Experiment: LB 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_26625 and AO356_26630 are separated by 188 nucleotides AO356_26630 and AO356_26635 are separated by 89 nucleotides AO356_26635 and AO356_26640 overlap by 8 nucleotides
AO356_26625: AO356_26625 - DNA-binding protein, at 6,060,862 to 6,061,716
_26625
AO356_26630: AO356_26630 - XshC-Cox1 family protein, at 6,061,905 to 6,062,876
_26630
AO356_26635: AO356_26635 - hydrolase, at 6,062,966 to 6,063,751
_26635
AO356_26640: AO356_26640 - MFS transporter, at 6,063,744 to 6,065,096
_26640
Position (kb)
6061
6062
6063 Strain fitness (log2 ratio)
-1
0
1
2 at 6061.586 kb on + strand, within AO356_26625 at 6061.586 kb on + strand, within AO356_26625 at 6061.766 kb on - strand at 6061.766 kb on - strand at 6061.766 kb on - strand at 6061.780 kb on + strand at 6061.781 kb on - strand at 6061.784 kb on + strand at 6061.785 kb on - strand at 6061.785 kb on - strand at 6061.785 kb on - strand at 6062.111 kb on - strand, within AO356_26630 at 6062.262 kb on + strand, within AO356_26630 at 6062.262 kb on + strand, within AO356_26630 at 6062.785 kb on + strand at 6062.876 kb on + strand at 6062.876 kb on + strand at 6062.877 kb on - strand at 6062.926 kb on - strand at 6063.144 kb on - strand, within AO356_26635 at 6063.200 kb on + strand, within AO356_26635 at 6063.309 kb on - strand, within AO356_26635 at 6063.590 kb on + strand, within AO356_26635 at 6063.794 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 37C remove 6,061,586 + AO356_26625 0.85 -0.2 6,061,586 + AO356_26625 0.85 -0.6 6,061,766 - -1.1 6,061,766 - +0.2 6,061,766 - +0.0 6,061,780 + +0.2 6,061,781 - +2.2 6,061,784 + +0.3 6,061,785 - -0.2 6,061,785 - -0.8 6,061,785 - +0.4 6,062,111 - AO356_26630 0.21 -0.7 6,062,262 + AO356_26630 0.37 -0.3 6,062,262 + AO356_26630 0.37 -0.5 6,062,785 + -0.5 6,062,876 + +0.4 6,062,876 + +0.1 6,062,877 - +0.7 6,062,926 - -1.1 6,063,144 - AO356_26635 0.23 +0.5 6,063,200 + AO356_26635 0.30 +0.6 6,063,309 - AO356_26635 0.44 +0.6 6,063,590 + AO356_26635 0.79 +1.2 6,063,794 - +0.6
Or see this region's nucleotide sequence