Experiment: LB 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_26200 and AO356_26205 overlap by 1 nucleotides AO356_26205 and AO356_26210 are separated by 180 nucleotides AO356_26210 and AO356_26215 are separated by 9 nucleotides
AO356_26200: AO356_26200 - nitrite reductase, at 5,933,564 to 5,936,125
_26200
AO356_26205: AO356_26205 - nitrite reductase, at 5,936,125 to 5,936,511
_26205
AO356_26210: AO356_26210 - histidine kinase, at 5,936,692 to 5,937,132
_26210
AO356_26215: AO356_26215 - AraC family transcriptional regulator, at 5,937,142 to 5,938,179
_26215
Position (kb) 5936
5937 Strain fitness (log2 ratio) -2
-1
0
1 at 5935.275 kb on - strand, within AO356_26200 at 5935.361 kb on + strand, within AO356_26200 at 5935.362 kb on - strand, within AO356_26200 at 5935.473 kb on - strand, within AO356_26200 at 5935.513 kb on + strand, within AO356_26200 at 5935.799 kb on + strand, within AO356_26200 at 5935.800 kb on - strand, within AO356_26200 at 5936.269 kb on + strand, within AO356_26205 at 5936.269 kb on + strand, within AO356_26205 at 5936.269 kb on + strand, within AO356_26205 at 5936.300 kb on - strand, within AO356_26205 at 5936.398 kb on + strand, within AO356_26205 at 5936.584 kb on + strand at 5936.584 kb on + strand at 5936.584 kb on + strand at 5936.866 kb on + strand, within AO356_26210 at 5937.115 kb on + strand at 5937.115 kb on + strand at 5937.116 kb on - strand at 5937.116 kb on - strand at 5937.116 kb on - strand at 5937.116 kb on - strand at 5937.239 kb on + strand at 5937.278 kb on + strand, within AO356_26215 at 5937.284 kb on + strand, within AO356_26215 at 5937.284 kb on + strand, within AO356_26215 at 5937.285 kb on - strand, within AO356_26215 at 5937.440 kb on + strand, within AO356_26215
Per-strain Table
Position Strand Gene LocusTag Fraction LB 37C remove 5,935,275 - AO356_26200 0.67 -0.1 5,935,361 + AO356_26200 0.70 +0.5 5,935,362 - AO356_26200 0.70 -0.9 5,935,473 - AO356_26200 0.75 +0.3 5,935,513 + AO356_26200 0.76 +0.4 5,935,799 + AO356_26200 0.87 -0.1 5,935,800 - AO356_26200 0.87 +0.3 5,936,269 + AO356_26205 0.37 -0.2 5,936,269 + AO356_26205 0.37 -1.4 5,936,269 + AO356_26205 0.37 +0.3 5,936,300 - AO356_26205 0.45 -2.2 5,936,398 + AO356_26205 0.71 -0.4 5,936,584 + -0.4 5,936,584 + +1.1 5,936,584 + +0.0 5,936,866 + AO356_26210 0.39 -0.1 5,937,115 + -0.1 5,937,115 + +0.2 5,937,116 - -0.3 5,937,116 - -0.2 5,937,116 - +0.0 5,937,116 - +1.0 5,937,239 + -0.7 5,937,278 + AO356_26215 0.13 +0.5 5,937,284 + AO356_26215 0.14 -0.9 5,937,284 + AO356_26215 0.14 +0.7 5,937,285 - AO356_26215 0.14 +0.1 5,937,440 + AO356_26215 0.29 +0.7
Or see this region's nucleotide sequence