Experiment: LB 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24545 and AO356_24550 are separated by 45 nucleotides AO356_24550 and AO356_24555 overlap by 4 nucleotides AO356_24555 and AO356_24560 are separated by 13 nucleotides
AO356_24545: AO356_24545 - peptidase S54, at 5,543,429 to 5,544,301
_24545
AO356_24550: AO356_24550 - hypothetical protein, at 5,544,347 to 5,544,607
_24550
AO356_24555: AO356_24555 - hypothetical protein, at 5,544,604 to 5,545,434
_24555
AO356_24560: AO356_24560 - aminopeptidase, at 5,545,448 to 5,548,105
_24560
Position (kb) 5544
5545
5546 Strain fitness (log2 ratio) -1
0
1 at 5543.766 kb on + strand, within AO356_24545 at 5543.766 kb on + strand, within AO356_24545 at 5543.807 kb on + strand, within AO356_24545 at 5543.808 kb on - strand, within AO356_24545 at 5543.808 kb on - strand, within AO356_24545 at 5544.092 kb on + strand, within AO356_24545 at 5544.092 kb on + strand, within AO356_24545 at 5544.120 kb on - strand, within AO356_24545 at 5544.120 kb on - strand, within AO356_24545 at 5544.286 kb on + strand at 5544.388 kb on + strand, within AO356_24550 at 5544.393 kb on - strand, within AO356_24550 at 5544.670 kb on + strand at 5544.671 kb on - strand at 5544.740 kb on - strand, within AO356_24555 at 5544.808 kb on + strand, within AO356_24555 at 5545.363 kb on + strand at 5545.399 kb on - strand at 5545.399 kb on - strand at 5545.403 kb on - strand at 5545.411 kb on + strand at 5545.432 kb on + strand at 5545.432 kb on + strand at 5545.433 kb on - strand at 5545.433 kb on - strand at 5545.475 kb on + strand at 5545.487 kb on + strand at 5545.488 kb on - strand at 5545.686 kb on - strand at 5545.736 kb on - strand, within AO356_24560 at 5545.794 kb on - strand, within AO356_24560 at 5545.853 kb on + strand, within AO356_24560 at 5545.853 kb on + strand, within AO356_24560 at 5545.853 kb on + strand, within AO356_24560 at 5545.853 kb on + strand, within AO356_24560 at 5545.853 kb on + strand, within AO356_24560 at 5545.853 kb on + strand, within AO356_24560 at 5545.853 kb on + strand, within AO356_24560 at 5545.853 kb on + strand, within AO356_24560 at 5545.853 kb on + strand, within AO356_24560 at 5545.853 kb on + strand, within AO356_24560 at 5545.854 kb on - strand, within AO356_24560 at 5545.854 kb on - strand, within AO356_24560 at 5545.854 kb on - strand, within AO356_24560 at 5545.854 kb on - strand, within AO356_24560 at 5545.857 kb on - strand, within AO356_24560 at 5545.920 kb on - strand, within AO356_24560 at 5546.086 kb on + strand, within AO356_24560 at 5546.087 kb on - strand, within AO356_24560 at 5546.106 kb on - strand, within AO356_24560 at 5546.198 kb on + strand, within AO356_24560 at 5546.198 kb on + strand, within AO356_24560 at 5546.272 kb on + strand, within AO356_24560 at 5546.272 kb on + strand, within AO356_24560 at 5546.273 kb on - strand, within AO356_24560 at 5546.273 kb on - strand, within AO356_24560 at 5546.369 kb on - strand, within AO356_24560 at 5546.369 kb on - strand, within AO356_24560
Per-strain Table
Position Strand Gene LocusTag Fraction LB 37C remove 5,543,766 + AO356_24545 0.39 +0.3 5,543,766 + AO356_24545 0.39 +0.7 5,543,807 + AO356_24545 0.43 -0.4 5,543,808 - AO356_24545 0.43 +0.0 5,543,808 - AO356_24545 0.43 -1.2 5,544,092 + AO356_24545 0.76 +0.3 5,544,092 + AO356_24545 0.76 -0.3 5,544,120 - AO356_24545 0.79 +0.9 5,544,120 - AO356_24545 0.79 +0.4 5,544,286 + +0.9 5,544,388 + AO356_24550 0.16 -0.5 5,544,393 - AO356_24550 0.18 -0.4 5,544,670 + +0.5 5,544,671 - +0.3 5,544,740 - AO356_24555 0.16 -0.6 5,544,808 + AO356_24555 0.25 -0.2 5,545,363 + +0.6 5,545,399 - -1.0 5,545,399 - +0.7 5,545,403 - -0.3 5,545,411 + -0.2 5,545,432 + +0.9 5,545,432 + -0.6 5,545,433 - -0.7 5,545,433 - -0.3 5,545,475 + +0.2 5,545,487 + -0.6 5,545,488 - +0.4 5,545,686 - +0.0 5,545,736 - AO356_24560 0.11 -0.9 5,545,794 - AO356_24560 0.13 -0.2 5,545,853 + AO356_24560 0.15 -0.0 5,545,853 + AO356_24560 0.15 +0.4 5,545,853 + AO356_24560 0.15 +0.3 5,545,853 + AO356_24560 0.15 -0.3 5,545,853 + AO356_24560 0.15 +1.1 5,545,853 + AO356_24560 0.15 +0.9 5,545,853 + AO356_24560 0.15 +0.6 5,545,853 + AO356_24560 0.15 +0.1 5,545,853 + AO356_24560 0.15 -0.7 5,545,853 + AO356_24560 0.15 +0.2 5,545,854 - AO356_24560 0.15 +0.4 5,545,854 - AO356_24560 0.15 -0.3 5,545,854 - AO356_24560 0.15 +0.4 5,545,854 - AO356_24560 0.15 +1.0 5,545,857 - AO356_24560 0.15 -0.1 5,545,920 - AO356_24560 0.18 +0.4 5,546,086 + AO356_24560 0.24 -0.7 5,546,087 - AO356_24560 0.24 -1.1 5,546,106 - AO356_24560 0.25 +0.3 5,546,198 + AO356_24560 0.28 +0.4 5,546,198 + AO356_24560 0.28 +0.1 5,546,272 + AO356_24560 0.31 +0.2 5,546,272 + AO356_24560 0.31 -0.6 5,546,273 - AO356_24560 0.31 +0.5 5,546,273 - AO356_24560 0.31 +0.8 5,546,369 - AO356_24560 0.35 +0.5 5,546,369 - AO356_24560 0.35 -0.1
Or see this region's nucleotide sequence