Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_22190

Experiment: LB 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_22185 and AO356_22190 overlap by 4 nucleotidesAO356_22190 and AO356_22195 are separated by 15 nucleotides AO356_22185: AO356_22185 - recombination factor protein RarA, at 4,966,409 to 4,967,734 _22185 AO356_22190: AO356_22190 - camphor resistance protein CrcB, at 4,967,731 to 4,968,105 _22190 AO356_22195: AO356_22195 - serine--tRNA ligase, at 4,968,121 to 4,969,401 _22195 Position (kb) 4967 4968 4969Strain fitness (log2 ratio) -2 -1 0 1 2at 4966.787 kb on + strand, within AO356_22185at 4966.788 kb on - strand, within AO356_22185at 4966.880 kb on + strand, within AO356_22185at 4966.880 kb on + strand, within AO356_22185at 4966.881 kb on - strand, within AO356_22185at 4966.881 kb on - strand, within AO356_22185at 4966.881 kb on - strand, within AO356_22185at 4966.881 kb on - strand, within AO356_22185at 4967.154 kb on - strand, within AO356_22185at 4967.213 kb on + strand, within AO356_22185at 4967.214 kb on - strand, within AO356_22185at 4967.255 kb on + strand, within AO356_22185at 4967.255 kb on + strand, within AO356_22185at 4967.256 kb on - strand, within AO356_22185at 4967.256 kb on - strand, within AO356_22185at 4967.256 kb on - strand, within AO356_22185at 4967.256 kb on - strand, within AO356_22185at 4967.402 kb on + strand, within AO356_22185at 4967.435 kb on + strand, within AO356_22185at 4967.435 kb on + strand, within AO356_22185at 4967.435 kb on + strand, within AO356_22185at 4967.435 kb on + strand, within AO356_22185at 4967.436 kb on - strand, within AO356_22185at 4967.436 kb on - strand, within AO356_22185at 4967.436 kb on - strand, within AO356_22185at 4967.552 kb on + strand, within AO356_22185at 4967.553 kb on - strand, within AO356_22185at 4967.600 kb on + strand, within AO356_22185at 4967.600 kb on + strand, within AO356_22185at 4967.600 kb on + strand, within AO356_22185at 4967.633 kb on + strandat 4967.633 kb on + strandat 4967.744 kb on + strandat 4967.744 kb on + strandat 4967.744 kb on + strandat 4967.833 kb on + strand, within AO356_22190at 4967.833 kb on + strand, within AO356_22190at 4967.833 kb on + strand, within AO356_22190at 4967.833 kb on + strand, within AO356_22190at 4967.885 kb on + strand, within AO356_22190at 4967.885 kb on + strand, within AO356_22190at 4967.885 kb on + strand, within AO356_22190at 4967.885 kb on + strand, within AO356_22190at 4967.887 kb on + strand, within AO356_22190at 4968.037 kb on + strand, within AO356_22190

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 37C
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4,966,787 + AO356_22185 0.29 +0.2
4,966,788 - AO356_22185 0.29 -0.9
4,966,880 + AO356_22185 0.36 -1.3
4,966,880 + AO356_22185 0.36 -0.7
4,966,881 - AO356_22185 0.36 -0.7
4,966,881 - AO356_22185 0.36 -1.1
4,966,881 - AO356_22185 0.36 +0.0
4,966,881 - AO356_22185 0.36 -1.3
4,967,154 - AO356_22185 0.56 -0.4
4,967,213 + AO356_22185 0.61 -0.2
4,967,214 - AO356_22185 0.61 -2.5
4,967,255 + AO356_22185 0.64 -0.4
4,967,255 + AO356_22185 0.64 +2.0
4,967,256 - AO356_22185 0.64 -0.4
4,967,256 - AO356_22185 0.64 -0.7
4,967,256 - AO356_22185 0.64 -0.5
4,967,256 - AO356_22185 0.64 +0.2
4,967,402 + AO356_22185 0.75 +0.3
4,967,435 + AO356_22185 0.77 +0.4
4,967,435 + AO356_22185 0.77 +0.3
4,967,435 + AO356_22185 0.77 -2.4
4,967,435 + AO356_22185 0.77 -0.1
4,967,436 - AO356_22185 0.77 -1.5
4,967,436 - AO356_22185 0.77 -2.3
4,967,436 - AO356_22185 0.77 -2.5
4,967,552 + AO356_22185 0.86 -0.0
4,967,553 - AO356_22185 0.86 +0.1
4,967,600 + AO356_22185 0.90 -0.6
4,967,600 + AO356_22185 0.90 +0.2
4,967,600 + AO356_22185 0.90 -0.6
4,967,633 + -0.6
4,967,633 + +0.6
4,967,744 + +0.8
4,967,744 + +0.7
4,967,744 + +1.1
4,967,833 + AO356_22190 0.27 -0.2
4,967,833 + AO356_22190 0.27 +0.4
4,967,833 + AO356_22190 0.27 -0.2
4,967,833 + AO356_22190 0.27 -1.2
4,967,885 + AO356_22190 0.41 +0.3
4,967,885 + AO356_22190 0.41 +0.5
4,967,885 + AO356_22190 0.41 +0.0
4,967,885 + AO356_22190 0.41 -0.0
4,967,887 + AO356_22190 0.42 +0.1
4,968,037 + AO356_22190 0.82 -0.1

Or see this region's nucleotide sequence