Experiment: LB 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_21735 and AO356_21740 are separated by 296 nucleotides AO356_21740 and AO356_21745 are separated by 19 nucleotides
AO356_21735: AO356_21735 - LysR family transcriptional regulator, at 4,865,739 to 4,866,623
_21735
AO356_21740: AO356_21740 - cytochrome C, at 4,866,920 to 4,867,291
_21740
AO356_21745: AO356_21745 - FAD-linked oxidoreductase, at 4,867,311 to 4,868,705
_21745
Position (kb)
4866
4867
4868 Strain fitness (log2 ratio)
-2
-1
0
1 at 4866.232 kb on - strand, within AO356_21735 at 4866.246 kb on + strand, within AO356_21735 at 4866.246 kb on + strand, within AO356_21735 at 4866.309 kb on + strand, within AO356_21735 at 4866.309 kb on + strand, within AO356_21735 at 4866.310 kb on - strand, within AO356_21735 at 4866.454 kb on - strand, within AO356_21735 at 4866.454 kb on - strand, within AO356_21735 at 4866.454 kb on - strand, within AO356_21735 at 4866.454 kb on - strand, within AO356_21735 at 4866.454 kb on - strand, within AO356_21735 at 4866.454 kb on - strand, within AO356_21735 at 4866.454 kb on - strand, within AO356_21735 at 4866.516 kb on + strand, within AO356_21735 at 4866.517 kb on - strand, within AO356_21735 at 4866.554 kb on - strand at 4866.576 kb on + strand at 4866.576 kb on + strand at 4866.610 kb on + strand at 4866.610 kb on + strand at 4866.610 kb on + strand at 4866.611 kb on - strand at 4866.611 kb on - strand at 4866.613 kb on + strand at 4866.614 kb on - strand at 4866.614 kb on - strand at 4866.614 kb on - strand at 4866.614 kb on - strand at 4866.708 kb on - strand at 4866.708 kb on - strand at 4866.814 kb on + strand at 4866.814 kb on + strand at 4866.815 kb on - strand at 4866.815 kb on - strand at 4866.855 kb on + strand at 4866.855 kb on + strand at 4866.919 kb on + strand at 4866.919 kb on + strand at 4866.919 kb on + strand at 4866.919 kb on + strand at 4866.919 kb on + strand at 4866.919 kb on + strand at 4866.919 kb on + strand at 4866.920 kb on - strand at 4867.026 kb on + strand, within AO356_21740 at 4867.026 kb on + strand, within AO356_21740 at 4867.026 kb on + strand, within AO356_21740 at 4867.026 kb on + strand, within AO356_21740 at 4867.196 kb on + strand, within AO356_21740 at 4867.197 kb on - strand, within AO356_21740 at 4867.303 kb on - strand at 4867.305 kb on + strand at 4867.306 kb on - strand at 4867.323 kb on + strand at 4867.738 kb on - strand, within AO356_21745 at 4867.800 kb on + strand, within AO356_21745 at 4867.801 kb on - strand, within AO356_21745 at 4868.182 kb on - strand, within AO356_21745 at 4868.182 kb on - strand, within AO356_21745 at 4868.277 kb on + strand, within AO356_21745 at 4868.277 kb on + strand, within AO356_21745
Per-strain Table
Position Strand Gene LocusTag Fraction LB 37C remove 4,866,232 - AO356_21735 0.56 +1.2 4,866,246 + AO356_21735 0.57 -0.0 4,866,246 + AO356_21735 0.57 -2.4 4,866,309 + AO356_21735 0.64 -0.8 4,866,309 + AO356_21735 0.64 -0.2 4,866,310 - AO356_21735 0.65 +0.3 4,866,454 - AO356_21735 0.81 -0.3 4,866,454 - AO356_21735 0.81 -0.1 4,866,454 - AO356_21735 0.81 +0.5 4,866,454 - AO356_21735 0.81 +0.0 4,866,454 - AO356_21735 0.81 -0.0 4,866,454 - AO356_21735 0.81 +0.5 4,866,454 - AO356_21735 0.81 +0.5 4,866,516 + AO356_21735 0.88 -0.2 4,866,517 - AO356_21735 0.88 -0.8 4,866,554 - +0.5 4,866,576 + +0.5 4,866,576 + -0.9 4,866,610 + +0.4 4,866,610 + -0.1 4,866,610 + -1.2 4,866,611 - +0.9 4,866,611 - +0.6 4,866,613 + +0.1 4,866,614 - -0.9 4,866,614 - +0.4 4,866,614 - +0.6 4,866,614 - -0.9 4,866,708 - +0.9 4,866,708 - -0.1 4,866,814 + +0.1 4,866,814 + +1.3 4,866,815 - -0.0 4,866,815 - -0.8 4,866,855 + +1.1 4,866,855 + -0.6 4,866,919 + +0.1 4,866,919 + +0.7 4,866,919 + -0.1 4,866,919 + -0.6 4,866,919 + +1.6 4,866,919 + +0.2 4,866,919 + +0.7 4,866,920 - -0.1 4,867,026 + AO356_21740 0.28 -0.1 4,867,026 + AO356_21740 0.28 -0.7 4,867,026 + AO356_21740 0.28 -1.4 4,867,026 + AO356_21740 0.28 +0.2 4,867,196 + AO356_21740 0.74 -0.1 4,867,197 - AO356_21740 0.74 -0.4 4,867,303 - -0.2 4,867,305 + +0.1 4,867,306 - -0.3 4,867,323 + +0.5 4,867,738 - AO356_21745 0.31 +0.0 4,867,800 + AO356_21745 0.35 +1.6 4,867,801 - AO356_21745 0.35 -1.5 4,868,182 - AO356_21745 0.62 +0.9 4,868,182 - AO356_21745 0.62 +0.2 4,868,277 + AO356_21745 0.69 -2.4 4,868,277 + AO356_21745 0.69 +0.1
Or see this region's nucleotide sequence