Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_17075

Experiment: LB 37C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_17070 and AO356_17075 overlap by 1 nucleotidesAO356_17075 and AO356_17080 are separated by 151 nucleotidesAO356_17080 and AO356_17085 are separated by 16 nucleotides AO356_17070: AO356_17070 - cytochrome B, at 3,843,196 to 3,844,407 _17070 AO356_17075: AO356_17075 - cytochrome C, at 3,844,407 to 3,845,189 _17075 AO356_17080: AO356_17080 - stringent starvation protein A, at 3,845,341 to 3,845,958 _17080 AO356_17085: AO356_17085 - peptidase, at 3,845,975 to 3,846,388 _17085 Position (kb) 3844 3845 3846Strain fitness (log2 ratio) -2 -1 0 1at 3843.409 kb on + strand, within AO356_17070at 3843.409 kb on + strand, within AO356_17070at 3843.490 kb on + strand, within AO356_17070at 3843.491 kb on - strand, within AO356_17070at 3843.732 kb on + strand, within AO356_17070at 3844.202 kb on - strand, within AO356_17070at 3844.327 kb on + strandat 3844.358 kb on - strandat 3844.442 kb on + strandat 3844.541 kb on + strand, within AO356_17075at 3844.554 kb on + strand, within AO356_17075at 3844.555 kb on - strand, within AO356_17075at 3844.776 kb on + strand, within AO356_17075at 3844.776 kb on + strand, within AO356_17075at 3844.895 kb on - strand, within AO356_17075at 3844.993 kb on + strand, within AO356_17075at 3845.112 kb on + strandat 3845.112 kb on + strandat 3845.112 kb on + strandat 3845.112 kb on + strandat 3845.112 kb on + strandat 3845.113 kb on - strandat 3845.113 kb on - strandat 3845.116 kb on + strandat 3845.116 kb on + strandat 3845.116 kb on + strandat 3845.116 kb on + strandat 3845.117 kb on - strandat 3845.117 kb on - strandat 3845.117 kb on - strandat 3845.117 kb on - strandat 3845.143 kb on + strandat 3845.151 kb on + strandat 3845.190 kb on + strandat 3845.191 kb on - strandat 3845.191 kb on - strandat 3845.198 kb on + strandat 3845.198 kb on + strandat 3845.199 kb on - strandat 3845.199 kb on - strandat 3845.238 kb on + strandat 3845.238 kb on + strandat 3845.238 kb on + strandat 3845.239 kb on - strandat 3845.239 kb on - strandat 3845.246 kb on + strandat 3845.246 kb on + strandat 3845.246 kb on + strandat 3845.246 kb on + strandat 3845.246 kb on + strandat 3845.246 kb on + strandat 3845.246 kb on + strandat 3845.246 kb on + strandat 3845.247 kb on - strandat 3845.247 kb on - strandat 3845.247 kb on - strandat 3845.247 kb on - strandat 3845.247 kb on - strandat 3845.247 kb on - strandat 3845.247 kb on - strandat 3845.368 kb on + strandat 3845.368 kb on + strandat 3845.390 kb on - strandat 3845.411 kb on + strand, within AO356_17080at 3845.412 kb on - strand, within AO356_17080at 3845.412 kb on - strand, within AO356_17080at 3845.412 kb on - strand, within AO356_17080at 3845.446 kb on + strand, within AO356_17080at 3845.446 kb on + strand, within AO356_17080at 3845.446 kb on + strand, within AO356_17080at 3845.447 kb on - strand, within AO356_17080at 3845.447 kb on - strand, within AO356_17080at 3845.447 kb on - strand, within AO356_17080at 3845.494 kb on + strand, within AO356_17080at 3845.560 kb on + strand, within AO356_17080at 3845.560 kb on + strand, within AO356_17080at 3845.561 kb on - strand, within AO356_17080at 3845.561 kb on - strand, within AO356_17080at 3845.603 kb on - strand, within AO356_17080at 3845.817 kb on - strand, within AO356_17080at 3845.825 kb on + strand, within AO356_17080at 3845.825 kb on + strand, within AO356_17080at 3845.826 kb on - strand, within AO356_17080at 3845.826 kb on - strand, within AO356_17080at 3845.826 kb on - strand, within AO356_17080at 3845.887 kb on + strand, within AO356_17080at 3845.887 kb on + strand, within AO356_17080at 3845.887 kb on + strand, within AO356_17080at 3845.887 kb on + strand, within AO356_17080at 3845.887 kb on + strand, within AO356_17080at 3845.887 kb on + strand, within AO356_17080at 3845.888 kb on - strand, within AO356_17080at 3845.888 kb on - strand, within AO356_17080at 3845.888 kb on - strand, within AO356_17080at 3845.888 kb on - strand, within AO356_17080at 3845.888 kb on - strand, within AO356_17080at 3845.888 kb on - strand, within AO356_17080at 3845.888 kb on - strand, within AO356_17080at 3845.889 kb on + strand, within AO356_17080at 3845.889 kb on + strand, within AO356_17080at 3845.889 kb on + strand, within AO356_17080at 3845.889 kb on + strand, within AO356_17080at 3845.889 kb on + strand, within AO356_17080at 3845.889 kb on + strand, within AO356_17080at 3845.890 kb on - strand, within AO356_17080at 3845.890 kb on - strand, within AO356_17080at 3845.890 kb on - strand, within AO356_17080at 3845.890 kb on - strand, within AO356_17080at 3845.957 kb on - strandat 3845.964 kb on - strandat 3845.964 kb on - strandat 3845.975 kb on - strandat 3845.993 kb on + strandat 3845.993 kb on + strandat 3845.993 kb on + strandat 3845.993 kb on + strandat 3845.993 kb on + strandat 3845.993 kb on + strandat 3845.993 kb on + strandat 3845.994 kb on - strandat 3845.994 kb on - strandat 3846.012 kb on - strandat 3846.012 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB 37C
remove
3,843,409 + AO356_17070 0.18 -0.0
3,843,409 + AO356_17070 0.18 -1.0
3,843,490 + AO356_17070 0.24 -0.3
3,843,491 - AO356_17070 0.24 -1.4
3,843,732 + AO356_17070 0.44 -1.4
3,844,202 - AO356_17070 0.83 -1.2
3,844,327 + +0.1
3,844,358 - +0.7
3,844,442 + +0.8
3,844,541 + AO356_17075 0.17 +1.4
3,844,554 + AO356_17075 0.19 +0.4
3,844,555 - AO356_17075 0.19 +0.2
3,844,776 + AO356_17075 0.47 +0.4
3,844,776 + AO356_17075 0.47 -1.4
3,844,895 - AO356_17075 0.62 +0.1
3,844,993 + AO356_17075 0.75 +0.1
3,845,112 + -0.0
3,845,112 + -0.2
3,845,112 + -1.0
3,845,112 + -0.2
3,845,112 + -0.2
3,845,113 - +1.2
3,845,113 - -0.4
3,845,116 + +0.7
3,845,116 + +0.2
3,845,116 + +0.5
3,845,116 + -0.9
3,845,117 - -0.8
3,845,117 - +0.8
3,845,117 - -0.4
3,845,117 - -1.0
3,845,143 + -0.5
3,845,151 + +0.8
3,845,190 + -0.8
3,845,191 - -0.5
3,845,191 - +0.8
3,845,198 + +0.3
3,845,198 + +0.5
3,845,199 - +0.4
3,845,199 - -0.8
3,845,238 + +0.5
3,845,238 + +0.7
3,845,238 + +0.2
3,845,239 - -0.4
3,845,239 - +0.2
3,845,246 + +0.4
3,845,246 + +0.8
3,845,246 + +0.0
3,845,246 + -0.3
3,845,246 + +0.8
3,845,246 + +0.9
3,845,246 + -1.2
3,845,246 + -0.0
3,845,247 - -0.8
3,845,247 - -0.7
3,845,247 - -0.3
3,845,247 - -0.3
3,845,247 - -0.7
3,845,247 - -1.6
3,845,247 - -0.9
3,845,368 + -0.1
3,845,368 + -0.4
3,845,390 - +0.3
3,845,411 + AO356_17080 0.11 -0.6
3,845,412 - AO356_17080 0.11 +0.6
3,845,412 - AO356_17080 0.11 -0.1
3,845,412 - AO356_17080 0.11 -0.1
3,845,446 + AO356_17080 0.17 -0.3
3,845,446 + AO356_17080 0.17 -0.1
3,845,446 + AO356_17080 0.17 -0.2
3,845,447 - AO356_17080 0.17 -0.3
3,845,447 - AO356_17080 0.17 -0.5
3,845,447 - AO356_17080 0.17 +0.1
3,845,494 + AO356_17080 0.25 -0.4
3,845,560 + AO356_17080 0.35 +1.4
3,845,560 + AO356_17080 0.35 +0.2
3,845,561 - AO356_17080 0.36 -0.1
3,845,561 - AO356_17080 0.36 +0.0
3,845,603 - AO356_17080 0.42 +0.3
3,845,817 - AO356_17080 0.77 -0.4
3,845,825 + AO356_17080 0.78 +0.1
3,845,825 + AO356_17080 0.78 +0.3
3,845,826 - AO356_17080 0.78 +0.1
3,845,826 - AO356_17080 0.78 +0.1
3,845,826 - AO356_17080 0.78 +0.1
3,845,887 + AO356_17080 0.88 -0.2
3,845,887 + AO356_17080 0.88 +0.1
3,845,887 + AO356_17080 0.88 -0.4
3,845,887 + AO356_17080 0.88 +0.6
3,845,887 + AO356_17080 0.88 +0.0
3,845,887 + AO356_17080 0.88 -0.8
3,845,888 - AO356_17080 0.89 +0.1
3,845,888 - AO356_17080 0.89 +0.6
3,845,888 - AO356_17080 0.89 +0.5
3,845,888 - AO356_17080 0.89 +0.4
3,845,888 - AO356_17080 0.89 +0.1
3,845,888 - AO356_17080 0.89 +0.0
3,845,888 - AO356_17080 0.89 -0.4
3,845,889 + AO356_17080 0.89 +0.4
3,845,889 + AO356_17080 0.89 +0.6
3,845,889 + AO356_17080 0.89 -0.1
3,845,889 + AO356_17080 0.89 +0.6
3,845,889 + AO356_17080 0.89 -1.0
3,845,889 + AO356_17080 0.89 -0.1
3,845,890 - AO356_17080 0.89 +0.4
3,845,890 - AO356_17080 0.89 +0.2
3,845,890 - AO356_17080 0.89 -1.6
3,845,890 - AO356_17080 0.89 -0.1
3,845,957 - -2.0
3,845,964 - +0.5
3,845,964 - -0.5
3,845,975 - +0.6
3,845,993 + +0.8
3,845,993 + -0.1
3,845,993 + -0.6
3,845,993 + -0.4
3,845,993 + +0.2
3,845,993 + +0.9
3,845,993 + +0.5
3,845,994 - -0.4
3,845,994 - +1.2
3,846,012 - +0.2
3,846,012 - -0.5

Or see this region's nucleotide sequence