Experiment: LB 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_15320 and AO356_15325 overlap by 1 nucleotides AO356_15325 and AO356_15330 are separated by 168 nucleotides
AO356_15320: AO356_15320 - lytic transglycosylase, at 3,469,781 to 3,470,791
_15320
AO356_15325: AO356_15325 - hypothetical protein, at 3,470,791 to 3,471,801
_15325
AO356_15330: AO356_15330 - D-alanyl-D-alanine carboxypeptidase, at 3,471,970 to 3,473,127
_15330
Position (kb)
3470
3471
3472 Strain fitness (log2 ratio)
-2
-1
0
1 at 3469.811 kb on + strand at 3469.874 kb on + strand at 3469.874 kb on + strand at 3469.874 kb on + strand at 3469.875 kb on - strand at 3469.875 kb on - strand at 3469.875 kb on - strand at 3469.875 kb on - strand at 3469.925 kb on + strand, within AO356_15320 at 3469.926 kb on - strand, within AO356_15320 at 3469.926 kb on - strand, within AO356_15320 at 3470.129 kb on + strand, within AO356_15320 at 3470.130 kb on - strand, within AO356_15320 at 3470.336 kb on + strand, within AO356_15320 at 3470.336 kb on + strand, within AO356_15320 at 3470.337 kb on - strand, within AO356_15320 at 3470.337 kb on - strand, within AO356_15320 at 3470.387 kb on + strand, within AO356_15320 at 3470.422 kb on + strand, within AO356_15320 at 3470.422 kb on + strand, within AO356_15320 at 3470.423 kb on - strand, within AO356_15320 at 3470.465 kb on + strand, within AO356_15320 at 3470.465 kb on + strand, within AO356_15320 at 3470.465 kb on + strand, within AO356_15320 at 3470.465 kb on + strand, within AO356_15320 at 3470.466 kb on - strand, within AO356_15320 at 3470.466 kb on - strand, within AO356_15320 at 3470.466 kb on - strand, within AO356_15320 at 3470.675 kb on + strand, within AO356_15320 at 3470.714 kb on + strand at 3470.714 kb on + strand at 3470.716 kb on + strand at 3470.732 kb on + strand at 3470.732 kb on + strand at 3470.732 kb on + strand at 3470.745 kb on + strand at 3470.745 kb on + strand at 3470.745 kb on + strand at 3470.745 kb on + strand at 3470.745 kb on + strand at 3470.745 kb on + strand at 3470.745 kb on + strand at 3470.745 kb on + strand at 3470.745 kb on + strand at 3470.745 kb on + strand at 3470.747 kb on + strand at 3470.789 kb on + strand at 3470.789 kb on + strand at 3470.789 kb on + strand at 3470.790 kb on - strand at 3470.805 kb on + strand at 3470.805 kb on + strand at 3470.805 kb on + strand at 3470.805 kb on + strand at 3470.805 kb on + strand at 3470.809 kb on + strand at 3470.809 kb on + strand at 3470.809 kb on + strand at 3470.809 kb on + strand at 3470.809 kb on + strand at 3470.809 kb on + strand at 3470.809 kb on + strand at 3470.809 kb on + strand at 3470.809 kb on + strand at 3470.809 kb on + strand at 3470.809 kb on + strand at 3470.809 kb on + strand at 3470.809 kb on + strand at 3471.632 kb on + strand, within AO356_15325 at 3471.632 kb on + strand, within AO356_15325 at 3471.632 kb on + strand, within AO356_15325 at 3471.632 kb on + strand, within AO356_15325 at 3471.633 kb on - strand, within AO356_15325 at 3471.799 kb on + strand at 3471.799 kb on + strand at 3471.799 kb on + strand at 3471.799 kb on + strand at 3471.799 kb on + strand at 3471.800 kb on - strand at 3471.800 kb on - strand at 3471.854 kb on + strand at 3471.855 kb on - strand at 3471.855 kb on - strand at 3471.857 kb on + strand at 3471.857 kb on + strand at 3471.858 kb on - strand at 3471.858 kb on - strand at 3471.890 kb on + strand at 3471.890 kb on + strand at 3471.890 kb on + strand at 3471.890 kb on + strand at 3471.890 kb on + strand at 3471.890 kb on + strand at 3471.890 kb on + strand at 3471.890 kb on + strand at 3471.890 kb on + strand at 3471.891 kb on - strand at 3471.891 kb on - strand at 3471.894 kb on + strand at 3471.895 kb on - strand at 3471.895 kb on - strand at 3472.007 kb on + strand at 3472.007 kb on + strand at 3472.008 kb on - strand at 3472.008 kb on - strand at 3472.122 kb on - strand, within AO356_15330 at 3472.181 kb on - strand, within AO356_15330 at 3472.181 kb on - strand, within AO356_15330 at 3472.484 kb on - strand, within AO356_15330 at 3472.555 kb on + strand, within AO356_15330 at 3472.556 kb on - strand, within AO356_15330 at 3472.556 kb on - strand, within AO356_15330 at 3472.777 kb on + strand, within AO356_15330 at 3472.778 kb on - strand, within AO356_15330 at 3472.778 kb on - strand, within AO356_15330 at 3472.778 kb on - strand, within AO356_15330
Per-strain Table
Position Strand Gene LocusTag Fraction LB 37C remove 3,469,811 + -0.4 3,469,874 + +0.2 3,469,874 + +0.8 3,469,874 + -0.4 3,469,875 - -0.9 3,469,875 - +0.3 3,469,875 - -0.2 3,469,875 - +0.1 3,469,925 + AO356_15320 0.14 -0.8 3,469,926 - AO356_15320 0.14 -0.3 3,469,926 - AO356_15320 0.14 +0.8 3,470,129 + AO356_15320 0.34 -0.4 3,470,130 - AO356_15320 0.35 +0.4 3,470,336 + AO356_15320 0.55 -0.3 3,470,336 + AO356_15320 0.55 +1.1 3,470,337 - AO356_15320 0.55 +0.6 3,470,337 - AO356_15320 0.55 +1.2 3,470,387 + AO356_15320 0.60 +0.8 3,470,422 + AO356_15320 0.63 -0.0 3,470,422 + AO356_15320 0.63 +0.2 3,470,423 - AO356_15320 0.64 -0.1 3,470,465 + AO356_15320 0.68 +0.6 3,470,465 + AO356_15320 0.68 +0.2 3,470,465 + AO356_15320 0.68 +0.1 3,470,465 + AO356_15320 0.68 +1.3 3,470,466 - AO356_15320 0.68 +0.9 3,470,466 - AO356_15320 0.68 +1.2 3,470,466 - AO356_15320 0.68 +0.2 3,470,675 + AO356_15320 0.88 +0.8 3,470,714 + +0.1 3,470,714 + +0.4 3,470,716 + +0.5 3,470,732 + +0.7 3,470,732 + +1.0 3,470,732 + +0.1 3,470,745 + +0.6 3,470,745 + +0.1 3,470,745 + -0.4 3,470,745 + -0.1 3,470,745 + +0.1 3,470,745 + -0.5 3,470,745 + +0.1 3,470,745 + -0.3 3,470,745 + +0.0 3,470,745 + +0.4 3,470,747 + +0.5 3,470,789 + +0.4 3,470,789 + +0.1 3,470,789 + +0.1 3,470,790 - -2.1 3,470,805 + -2.6 3,470,805 + +0.6 3,470,805 + +0.4 3,470,805 + -0.5 3,470,805 + +0.6 3,470,809 + +0.3 3,470,809 + +0.1 3,470,809 + +0.3 3,470,809 + +0.1 3,470,809 + -0.4 3,470,809 + +0.3 3,470,809 + +0.7 3,470,809 + -0.4 3,470,809 + -0.8 3,470,809 + -0.0 3,470,809 + +0.2 3,470,809 + +0.0 3,470,809 + -0.4 3,471,632 + AO356_15325 0.83 -2.0 3,471,632 + AO356_15325 0.83 +0.4 3,471,632 + AO356_15325 0.83 +0.2 3,471,632 + AO356_15325 0.83 -2.3 3,471,633 - AO356_15325 0.83 -1.7 3,471,799 + -1.4 3,471,799 + +0.5 3,471,799 + +0.4 3,471,799 + -0.1 3,471,799 + +0.3 3,471,800 - +0.3 3,471,800 - +0.3 3,471,854 + +0.2 3,471,855 - +0.5 3,471,855 - +1.0 3,471,857 + +0.6 3,471,857 + -0.6 3,471,858 - +1.3 3,471,858 - +0.4 3,471,890 + +0.6 3,471,890 + -0.1 3,471,890 + +0.1 3,471,890 + +1.2 3,471,890 + +0.8 3,471,890 + -0.1 3,471,890 + +0.6 3,471,890 + +0.5 3,471,890 + +0.5 3,471,891 - +1.1 3,471,891 - +0.9 3,471,894 + +0.1 3,471,895 - -0.0 3,471,895 - -1.1 3,472,007 + +0.6 3,472,007 + +1.1 3,472,008 - +0.7 3,472,008 - -0.3 3,472,122 - AO356_15330 0.13 +0.4 3,472,181 - AO356_15330 0.18 +0.2 3,472,181 - AO356_15330 0.18 -0.0 3,472,484 - AO356_15330 0.44 +1.0 3,472,555 + AO356_15330 0.51 +0.2 3,472,556 - AO356_15330 0.51 +0.7 3,472,556 - AO356_15330 0.51 +0.5 3,472,777 + AO356_15330 0.70 +1.2 3,472,778 - AO356_15330 0.70 +0.8 3,472,778 - AO356_15330 0.70 +0.6 3,472,778 - AO356_15330 0.70 +0.1
Or see this region's nucleotide sequence