Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_14870

Experiment: LB 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_14865 and AO356_14870 are separated by 293 nucleotidesAO356_14870 and AO356_14875 overlap by 8 nucleotides AO356_14865: AO356_14865 - ATP-dependent DNA helicase, at 3,364,111 to 3,368,424 _14865 AO356_14870: AO356_14870 - dTDP-4-dehydrorhamnose reductase, at 3,368,718 to 3,369,602 _14870 AO356_14875: AO356_14875 - NAD-dependent dehydratase, at 3,369,595 to 3,370,524 _14875 Position (kb) 3368 3369 3370Strain fitness (log2 ratio) -2 -1 0 1 2at 3367.961 kb on + strand, within AO356_14865at 3367.961 kb on + strand, within AO356_14865at 3367.961 kb on + strand, within AO356_14865at 3367.962 kb on - strand, within AO356_14865at 3367.962 kb on - strand, within AO356_14865at 3367.962 kb on - strand, within AO356_14865at 3367.962 kb on - strand, within AO356_14865at 3368.048 kb on - strandat 3368.048 kb on - strandat 3368.134 kb on + strandat 3368.134 kb on + strandat 3368.134 kb on + strandat 3368.134 kb on + strandat 3368.134 kb on + strandat 3368.134 kb on + strandat 3368.134 kb on + strandat 3368.134 kb on + strandat 3368.134 kb on + strandat 3368.134 kb on + strandat 3368.134 kb on + strandat 3368.134 kb on + strandat 3368.135 kb on - strandat 3368.135 kb on - strandat 3368.135 kb on - strandat 3368.135 kb on - strandat 3368.135 kb on - strandat 3368.135 kb on - strandat 3368.135 kb on - strandat 3368.136 kb on + strandat 3368.136 kb on + strandat 3368.137 kb on - strandat 3368.137 kb on - strandat 3368.137 kb on - strandat 3368.168 kb on + strandat 3368.168 kb on + strandat 3368.169 kb on - strandat 3368.169 kb on - strandat 3368.169 kb on - strandat 3368.169 kb on - strandat 3368.169 kb on - strandat 3368.424 kb on + strandat 3368.434 kb on + strandat 3368.462 kb on + strandat 3368.462 kb on + strandat 3368.463 kb on - strandat 3368.526 kb on + strandat 3368.526 kb on + strandat 3368.526 kb on + strandat 3368.526 kb on + strandat 3368.526 kb on + strandat 3368.526 kb on + strandat 3368.526 kb on + strandat 3368.526 kb on + strandat 3368.527 kb on - strandat 3368.527 kb on - strandat 3368.527 kb on - strandat 3368.527 kb on - strandat 3368.527 kb on - strandat 3368.527 kb on - strandat 3368.536 kb on + strandat 3368.537 kb on - strandat 3368.537 kb on - strandat 3368.610 kb on + strandat 3368.610 kb on + strandat 3368.630 kb on + strandat 3368.697 kb on + strandat 3368.697 kb on + strandat 3368.697 kb on + strandat 3368.697 kb on + strandat 3368.697 kb on + strandat 3368.717 kb on + strandat 3368.732 kb on + strandat 3368.732 kb on + strandat 3368.732 kb on + strandat 3368.732 kb on + strandat 3368.732 kb on + strandat 3368.732 kb on + strandat 3368.737 kb on + strandat 3368.737 kb on + strandat 3368.898 kb on + strand, within AO356_14870at 3368.898 kb on + strand, within AO356_14870at 3368.898 kb on + strand, within AO356_14870at 3368.898 kb on + strand, within AO356_14870at 3368.898 kb on + strand, within AO356_14870at 3368.898 kb on + strand, within AO356_14870at 3368.898 kb on + strand, within AO356_14870at 3368.901 kb on + strand, within AO356_14870at 3368.901 kb on + strand, within AO356_14870at 3368.901 kb on + strand, within AO356_14870at 3369.057 kb on + strand, within AO356_14870at 3369.348 kb on + strand, within AO356_14870at 3369.348 kb on + strand, within AO356_14870at 3369.348 kb on + strand, within AO356_14870

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 37C
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3,367,961 + AO356_14865 0.89 -0.2
3,367,961 + AO356_14865 0.89 -0.1
3,367,961 + AO356_14865 0.89 +0.4
3,367,962 - AO356_14865 0.89 -0.0
3,367,962 - AO356_14865 0.89 +0.9
3,367,962 - AO356_14865 0.89 -0.2
3,367,962 - AO356_14865 0.89 +0.2
3,368,048 - -0.3
3,368,048 - +0.1
3,368,134 + +0.8
3,368,134 + -0.4
3,368,134 + +0.4
3,368,134 + -0.1
3,368,134 + +0.7
3,368,134 + +0.7
3,368,134 + +1.0
3,368,134 + +0.9
3,368,134 + +0.8
3,368,134 + +0.4
3,368,134 + +1.3
3,368,134 + -0.1
3,368,135 - +0.0
3,368,135 - +1.3
3,368,135 - +0.3
3,368,135 - +0.0
3,368,135 - +1.0
3,368,135 - -0.4
3,368,135 - +0.4
3,368,136 + +1.2
3,368,136 + +0.2
3,368,137 - +0.2
3,368,137 - -0.6
3,368,137 - +1.1
3,368,168 + -2.4
3,368,168 + -0.3
3,368,169 - +0.1
3,368,169 - -0.9
3,368,169 - +1.9
3,368,169 - -0.4
3,368,169 - +0.9
3,368,424 + +0.7
3,368,434 + -0.2
3,368,462 + +0.6
3,368,462 + +0.7
3,368,463 - +1.0
3,368,526 + +0.7
3,368,526 + +0.0
3,368,526 + -0.9
3,368,526 + -0.1
3,368,526 + +0.3
3,368,526 + -0.2
3,368,526 + +1.1
3,368,526 + -0.7
3,368,527 - -0.2
3,368,527 - -0.6
3,368,527 - +0.1
3,368,527 - -0.0
3,368,527 - -0.3
3,368,527 - +0.6
3,368,536 + +0.2
3,368,537 - +1.0
3,368,537 - +0.9
3,368,610 + -0.1
3,368,610 + +0.1
3,368,630 + -0.4
3,368,697 + +0.9
3,368,697 + -0.4
3,368,697 + +0.3
3,368,697 + +0.3
3,368,697 + +0.0
3,368,717 + -2.3
3,368,732 + -0.6
3,368,732 + -0.4
3,368,732 + -1.2
3,368,732 + -2.5
3,368,732 + -0.1
3,368,732 + -1.2
3,368,737 + -0.8
3,368,737 + -0.4
3,368,898 + AO356_14870 0.20 -1.5
3,368,898 + AO356_14870 0.20 -0.5
3,368,898 + AO356_14870 0.20 -0.8
3,368,898 + AO356_14870 0.20 -0.5
3,368,898 + AO356_14870 0.20 -1.1
3,368,898 + AO356_14870 0.20 -1.0
3,368,898 + AO356_14870 0.20 +1.0
3,368,901 + AO356_14870 0.21 +0.2
3,368,901 + AO356_14870 0.21 -0.5
3,368,901 + AO356_14870 0.21 -1.1
3,369,057 + AO356_14870 0.38 -0.8
3,369,348 + AO356_14870 0.71 -1.9
3,369,348 + AO356_14870 0.71 -1.3
3,369,348 + AO356_14870 0.71 +0.0

Or see this region's nucleotide sequence