Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_13685

Experiment: LB 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_13680 and AO356_13685 are separated by 151 nucleotidesAO356_13685 and AO356_13690 are separated by 24 nucleotides AO356_13680: AO356_13680 - transketolase, at 3,102,232 to 3,104,229 _13680 AO356_13685: AO356_13685 - glyceraldehyde-3-phosphate dehydrogenase, at 3,104,381 to 3,105,436 _13685 AO356_13690: AO356_13690 - phosphoglycerate kinase, at 3,105,461 to 3,106,624 _13690 Position (kb) 3104 3105 3106Strain fitness (log2 ratio) -2 -1 0 1 2at 3104.359 kb on + strandat 3104.359 kb on + strandat 3104.359 kb on + strandat 3104.359 kb on + strandat 3104.359 kb on + strandat 3104.431 kb on - strandat 3104.528 kb on + strand, within AO356_13685at 3104.529 kb on - strand, within AO356_13685at 3104.600 kb on - strand, within AO356_13685at 3104.600 kb on - strand, within AO356_13685at 3104.600 kb on - strand, within AO356_13685at 3104.805 kb on - strand, within AO356_13685at 3104.805 kb on - strand, within AO356_13685at 3104.922 kb on - strand, within AO356_13685at 3104.922 kb on - strand, within AO356_13685at 3104.922 kb on - strand, within AO356_13685at 3105.268 kb on + strand, within AO356_13685at 3105.401 kb on + strandat 3105.434 kb on + strandat 3105.442 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 37C
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3,104,359 + +0.5
3,104,359 + +0.5
3,104,359 + -0.9
3,104,359 + +0.2
3,104,359 + -1.5
3,104,431 - -0.6
3,104,528 + AO356_13685 0.14 -0.1
3,104,529 - AO356_13685 0.14 -2.1
3,104,600 - AO356_13685 0.21 -1.1
3,104,600 - AO356_13685 0.21 +0.7
3,104,600 - AO356_13685 0.21 -2.5
3,104,805 - AO356_13685 0.40 -1.1
3,104,805 - AO356_13685 0.40 +0.0
3,104,922 - AO356_13685 0.51 -1.0
3,104,922 - AO356_13685 0.51 +0.1
3,104,922 - AO356_13685 0.51 -2.4
3,105,268 + AO356_13685 0.84 +2.3
3,105,401 + -0.1
3,105,434 + -0.0
3,105,442 + +0.6

Or see this region's nucleotide sequence