Experiment: LB 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_08870 and AO356_08875 are separated by 107 nucleotides AO356_08875 and AO356_08880 overlap by 15 nucleotides
AO356_08870: AO356_08870 - polymerase, at 1,999,992 to 2,001,164
_08870
AO356_08875: AO356_08875 - toluene tolerance protein, at 2,001,272 to 2,001,877
_08875
AO356_08880: AO356_08880 - glycosyl transferase, at 2,001,863 to 2,002,966
_08880
Position (kb)
2001
2002 Strain fitness (log2 ratio)
-2
-1
0
1 at 2000.509 kb on + strand, within AO356_08870 at 2000.509 kb on + strand, within AO356_08870 at 2000.677 kb on + strand, within AO356_08870 at 2000.677 kb on + strand, within AO356_08870 at 2000.677 kb on + strand, within AO356_08870 at 2000.744 kb on + strand, within AO356_08870 at 2000.744 kb on + strand, within AO356_08870 at 2000.744 kb on + strand, within AO356_08870 at 2000.744 kb on + strand, within AO356_08870 at 2000.745 kb on - strand, within AO356_08870 at 2000.753 kb on - strand, within AO356_08870 at 2000.758 kb on + strand, within AO356_08870 at 2000.758 kb on + strand, within AO356_08870 at 2000.758 kb on + strand, within AO356_08870 at 2000.758 kb on + strand, within AO356_08870 at 2000.758 kb on + strand, within AO356_08870 at 2000.758 kb on + strand, within AO356_08870 at 2000.758 kb on + strand, within AO356_08870 at 2000.759 kb on - strand, within AO356_08870 at 2000.759 kb on - strand, within AO356_08870 at 2000.759 kb on - strand, within AO356_08870 at 2000.759 kb on - strand, within AO356_08870 at 2000.878 kb on + strand, within AO356_08870 at 2000.878 kb on + strand, within AO356_08870 at 2000.878 kb on + strand, within AO356_08870 at 2000.878 kb on + strand, within AO356_08870 at 2000.878 kb on + strand, within AO356_08870 at 2000.879 kb on - strand, within AO356_08870 at 2000.879 kb on - strand, within AO356_08870 at 2000.879 kb on - strand, within AO356_08870 at 2000.971 kb on + strand, within AO356_08870 at 2000.971 kb on + strand, within AO356_08870 at 2000.972 kb on - strand, within AO356_08870 at 2000.972 kb on - strand, within AO356_08870 at 2000.972 kb on - strand, within AO356_08870 at 2000.995 kb on - strand, within AO356_08870 at 2000.995 kb on - strand, within AO356_08870 at 2001.118 kb on - strand at 2001.166 kb on + strand at 2001.166 kb on + strand at 2001.166 kb on + strand at 2001.166 kb on + strand at 2001.166 kb on + strand at 2001.166 kb on + strand at 2001.167 kb on - strand at 2001.167 kb on - strand at 2001.175 kb on + strand at 2001.176 kb on - strand at 2001.185 kb on - strand at 2001.269 kb on - strand at 2001.549 kb on - strand, within AO356_08875 at 2001.614 kb on - strand, within AO356_08875 at 2001.807 kb on - strand, within AO356_08875 at 2001.809 kb on - strand, within AO356_08875 at 2001.809 kb on - strand, within AO356_08875 at 2002.027 kb on - strand, within AO356_08880 at 2002.168 kb on - strand, within AO356_08880 at 2002.376 kb on + strand, within AO356_08880 at 2002.376 kb on + strand, within AO356_08880 at 2002.377 kb on - strand, within AO356_08880 at 2002.377 kb on - strand, within AO356_08880 at 2002.377 kb on - strand, within AO356_08880 at 2002.664 kb on - strand, within AO356_08880 at 2002.664 kb on - strand, within AO356_08880 at 2002.664 kb on - strand, within AO356_08880 at 2002.691 kb on + strand, within AO356_08880 at 2002.691 kb on + strand, within AO356_08880 at 2002.692 kb on - strand, within AO356_08880 at 2002.692 kb on - strand, within AO356_08880 at 2002.692 kb on - strand, within AO356_08880 at 2002.795 kb on + strand, within AO356_08880 at 2002.795 kb on + strand, within AO356_08880 at 2002.795 kb on + strand, within AO356_08880 at 2002.796 kb on - strand, within AO356_08880 at 2002.796 kb on - strand, within AO356_08880 at 2002.796 kb on - strand, within AO356_08880
Per-strain Table
Position Strand Gene LocusTag Fraction LB 37C remove 2,000,509 + AO356_08870 0.44 +0.1 2,000,509 + AO356_08870 0.44 +0.4 2,000,677 + AO356_08870 0.58 +0.1 2,000,677 + AO356_08870 0.58 +1.0 2,000,677 + AO356_08870 0.58 -1.4 2,000,744 + AO356_08870 0.64 -0.4 2,000,744 + AO356_08870 0.64 +0.9 2,000,744 + AO356_08870 0.64 -2.2 2,000,744 + AO356_08870 0.64 +0.0 2,000,745 - AO356_08870 0.64 -0.2 2,000,753 - AO356_08870 0.65 +1.0 2,000,758 + AO356_08870 0.65 -0.3 2,000,758 + AO356_08870 0.65 +0.2 2,000,758 + AO356_08870 0.65 +0.5 2,000,758 + AO356_08870 0.65 +1.3 2,000,758 + AO356_08870 0.65 +0.1 2,000,758 + AO356_08870 0.65 +0.7 2,000,758 + AO356_08870 0.65 -0.3 2,000,759 - AO356_08870 0.65 -1.1 2,000,759 - AO356_08870 0.65 -0.4 2,000,759 - AO356_08870 0.65 +1.4 2,000,759 - AO356_08870 0.65 +0.0 2,000,878 + AO356_08870 0.76 +1.2 2,000,878 + AO356_08870 0.76 -0.5 2,000,878 + AO356_08870 0.76 -0.8 2,000,878 + AO356_08870 0.76 -0.8 2,000,878 + AO356_08870 0.76 +0.6 2,000,879 - AO356_08870 0.76 -0.3 2,000,879 - AO356_08870 0.76 +0.0 2,000,879 - AO356_08870 0.76 -1.3 2,000,971 + AO356_08870 0.83 -2.2 2,000,971 + AO356_08870 0.83 +0.2 2,000,972 - AO356_08870 0.84 -1.0 2,000,972 - AO356_08870 0.84 +0.3 2,000,972 - AO356_08870 0.84 -0.7 2,000,995 - AO356_08870 0.86 -0.5 2,000,995 - AO356_08870 0.86 -0.2 2,001,118 - -0.7 2,001,166 + +0.6 2,001,166 + -0.7 2,001,166 + +0.1 2,001,166 + -0.5 2,001,166 + -0.4 2,001,166 + -2.2 2,001,167 - +0.2 2,001,167 - -0.7 2,001,175 + -0.1 2,001,176 - +0.5 2,001,185 - +0.1 2,001,269 - -1.1 2,001,549 - AO356_08875 0.46 -0.1 2,001,614 - AO356_08875 0.56 +1.1 2,001,807 - AO356_08875 0.88 -1.8 2,001,809 - AO356_08875 0.89 -1.0 2,001,809 - AO356_08875 0.89 -1.3 2,002,027 - AO356_08880 0.15 -0.0 2,002,168 - AO356_08880 0.28 +0.0 2,002,376 + AO356_08880 0.46 -0.4 2,002,376 + AO356_08880 0.46 -0.6 2,002,377 - AO356_08880 0.47 -0.4 2,002,377 - AO356_08880 0.47 -0.6 2,002,377 - AO356_08880 0.47 -1.4 2,002,664 - AO356_08880 0.73 -0.2 2,002,664 - AO356_08880 0.73 +1.0 2,002,664 - AO356_08880 0.73 -0.4 2,002,691 + AO356_08880 0.75 -1.3 2,002,691 + AO356_08880 0.75 +0.7 2,002,692 - AO356_08880 0.75 +0.5 2,002,692 - AO356_08880 0.75 -0.9 2,002,692 - AO356_08880 0.75 -1.3 2,002,795 + AO356_08880 0.84 -0.6 2,002,795 + AO356_08880 0.84 -1.9 2,002,795 + AO356_08880 0.84 +0.2 2,002,796 - AO356_08880 0.85 -0.8 2,002,796 - AO356_08880 0.85 +0.8 2,002,796 - AO356_08880 0.85 -0.7
Or see this region's nucleotide sequence