Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_08875

Experiment: LB 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_08870 and AO356_08875 are separated by 107 nucleotidesAO356_08875 and AO356_08880 overlap by 15 nucleotides AO356_08870: AO356_08870 - polymerase, at 1,999,992 to 2,001,164 _08870 AO356_08875: AO356_08875 - toluene tolerance protein, at 2,001,272 to 2,001,877 _08875 AO356_08880: AO356_08880 - glycosyl transferase, at 2,001,863 to 2,002,966 _08880 Position (kb) 2001 2002Strain fitness (log2 ratio) -2 -1 0 1at 2000.509 kb on + strand, within AO356_08870at 2000.509 kb on + strand, within AO356_08870at 2000.677 kb on + strand, within AO356_08870at 2000.677 kb on + strand, within AO356_08870at 2000.677 kb on + strand, within AO356_08870at 2000.744 kb on + strand, within AO356_08870at 2000.744 kb on + strand, within AO356_08870at 2000.744 kb on + strand, within AO356_08870at 2000.744 kb on + strand, within AO356_08870at 2000.745 kb on - strand, within AO356_08870at 2000.753 kb on - strand, within AO356_08870at 2000.758 kb on + strand, within AO356_08870at 2000.758 kb on + strand, within AO356_08870at 2000.758 kb on + strand, within AO356_08870at 2000.758 kb on + strand, within AO356_08870at 2000.758 kb on + strand, within AO356_08870at 2000.758 kb on + strand, within AO356_08870at 2000.758 kb on + strand, within AO356_08870at 2000.759 kb on - strand, within AO356_08870at 2000.759 kb on - strand, within AO356_08870at 2000.759 kb on - strand, within AO356_08870at 2000.759 kb on - strand, within AO356_08870at 2000.878 kb on + strand, within AO356_08870at 2000.878 kb on + strand, within AO356_08870at 2000.878 kb on + strand, within AO356_08870at 2000.878 kb on + strand, within AO356_08870at 2000.878 kb on + strand, within AO356_08870at 2000.879 kb on - strand, within AO356_08870at 2000.879 kb on - strand, within AO356_08870at 2000.879 kb on - strand, within AO356_08870at 2000.971 kb on + strand, within AO356_08870at 2000.971 kb on + strand, within AO356_08870at 2000.972 kb on - strand, within AO356_08870at 2000.972 kb on - strand, within AO356_08870at 2000.972 kb on - strand, within AO356_08870at 2000.995 kb on - strand, within AO356_08870at 2000.995 kb on - strand, within AO356_08870at 2001.118 kb on - strandat 2001.166 kb on + strandat 2001.166 kb on + strandat 2001.166 kb on + strandat 2001.166 kb on + strandat 2001.166 kb on + strandat 2001.166 kb on + strandat 2001.167 kb on - strandat 2001.167 kb on - strandat 2001.175 kb on + strandat 2001.176 kb on - strandat 2001.185 kb on - strandat 2001.269 kb on - strandat 2001.549 kb on - strand, within AO356_08875at 2001.614 kb on - strand, within AO356_08875at 2001.807 kb on - strand, within AO356_08875at 2001.809 kb on - strand, within AO356_08875at 2001.809 kb on - strand, within AO356_08875at 2002.027 kb on - strand, within AO356_08880at 2002.168 kb on - strand, within AO356_08880at 2002.376 kb on + strand, within AO356_08880at 2002.376 kb on + strand, within AO356_08880at 2002.377 kb on - strand, within AO356_08880at 2002.377 kb on - strand, within AO356_08880at 2002.377 kb on - strand, within AO356_08880at 2002.664 kb on - strand, within AO356_08880at 2002.664 kb on - strand, within AO356_08880at 2002.664 kb on - strand, within AO356_08880at 2002.691 kb on + strand, within AO356_08880at 2002.691 kb on + strand, within AO356_08880at 2002.692 kb on - strand, within AO356_08880at 2002.692 kb on - strand, within AO356_08880at 2002.692 kb on - strand, within AO356_08880at 2002.795 kb on + strand, within AO356_08880at 2002.795 kb on + strand, within AO356_08880at 2002.795 kb on + strand, within AO356_08880at 2002.796 kb on - strand, within AO356_08880at 2002.796 kb on - strand, within AO356_08880at 2002.796 kb on - strand, within AO356_08880

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 37C
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2,000,509 + AO356_08870 0.44 +0.1
2,000,509 + AO356_08870 0.44 +0.4
2,000,677 + AO356_08870 0.58 +0.1
2,000,677 + AO356_08870 0.58 +1.0
2,000,677 + AO356_08870 0.58 -1.4
2,000,744 + AO356_08870 0.64 -0.4
2,000,744 + AO356_08870 0.64 +0.9
2,000,744 + AO356_08870 0.64 -2.2
2,000,744 + AO356_08870 0.64 +0.0
2,000,745 - AO356_08870 0.64 -0.2
2,000,753 - AO356_08870 0.65 +1.0
2,000,758 + AO356_08870 0.65 -0.3
2,000,758 + AO356_08870 0.65 +0.2
2,000,758 + AO356_08870 0.65 +0.5
2,000,758 + AO356_08870 0.65 +1.3
2,000,758 + AO356_08870 0.65 +0.1
2,000,758 + AO356_08870 0.65 +0.7
2,000,758 + AO356_08870 0.65 -0.3
2,000,759 - AO356_08870 0.65 -1.1
2,000,759 - AO356_08870 0.65 -0.4
2,000,759 - AO356_08870 0.65 +1.4
2,000,759 - AO356_08870 0.65 +0.0
2,000,878 + AO356_08870 0.76 +1.2
2,000,878 + AO356_08870 0.76 -0.5
2,000,878 + AO356_08870 0.76 -0.8
2,000,878 + AO356_08870 0.76 -0.8
2,000,878 + AO356_08870 0.76 +0.6
2,000,879 - AO356_08870 0.76 -0.3
2,000,879 - AO356_08870 0.76 +0.0
2,000,879 - AO356_08870 0.76 -1.3
2,000,971 + AO356_08870 0.83 -2.2
2,000,971 + AO356_08870 0.83 +0.2
2,000,972 - AO356_08870 0.84 -1.0
2,000,972 - AO356_08870 0.84 +0.3
2,000,972 - AO356_08870 0.84 -0.7
2,000,995 - AO356_08870 0.86 -0.5
2,000,995 - AO356_08870 0.86 -0.2
2,001,118 - -0.7
2,001,166 + +0.6
2,001,166 + -0.7
2,001,166 + +0.1
2,001,166 + -0.5
2,001,166 + -0.4
2,001,166 + -2.2
2,001,167 - +0.2
2,001,167 - -0.7
2,001,175 + -0.1
2,001,176 - +0.5
2,001,185 - +0.1
2,001,269 - -1.1
2,001,549 - AO356_08875 0.46 -0.1
2,001,614 - AO356_08875 0.56 +1.1
2,001,807 - AO356_08875 0.88 -1.8
2,001,809 - AO356_08875 0.89 -1.0
2,001,809 - AO356_08875 0.89 -1.3
2,002,027 - AO356_08880 0.15 -0.0
2,002,168 - AO356_08880 0.28 +0.0
2,002,376 + AO356_08880 0.46 -0.4
2,002,376 + AO356_08880 0.46 -0.6
2,002,377 - AO356_08880 0.47 -0.4
2,002,377 - AO356_08880 0.47 -0.6
2,002,377 - AO356_08880 0.47 -1.4
2,002,664 - AO356_08880 0.73 -0.2
2,002,664 - AO356_08880 0.73 +1.0
2,002,664 - AO356_08880 0.73 -0.4
2,002,691 + AO356_08880 0.75 -1.3
2,002,691 + AO356_08880 0.75 +0.7
2,002,692 - AO356_08880 0.75 +0.5
2,002,692 - AO356_08880 0.75 -0.9
2,002,692 - AO356_08880 0.75 -1.3
2,002,795 + AO356_08880 0.84 -0.6
2,002,795 + AO356_08880 0.84 -1.9
2,002,795 + AO356_08880 0.84 +0.2
2,002,796 - AO356_08880 0.85 -0.8
2,002,796 - AO356_08880 0.85 +0.8
2,002,796 - AO356_08880 0.85 -0.7

Or see this region's nucleotide sequence