Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_06795

Experiment: LB 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_06790 and AO356_06795 are separated by 1 nucleotidesAO356_06795 and AO356_06800 overlap by 1 nucleotides AO356_06790: AO356_06790 - TonB-dependent receptor, at 1,497,690 to 1,500,041 _06790 AO356_06795: AO356_06795 - histidine kinase, at 1,500,043 to 1,502,430 _06795 AO356_06800: AO356_06800 - AraC family transcriptional regulator, at 1,502,430 to 1,503,230 _06800 Position (kb) 1500 1501 1502 1503Strain fitness (log2 ratio) -2 -1 0 1at 1499.174 kb on + strand, within AO356_06790at 1499.191 kb on + strand, within AO356_06790at 1499.192 kb on - strand, within AO356_06790at 1499.192 kb on - strand, within AO356_06790at 1499.299 kb on + strand, within AO356_06790at 1499.299 kb on + strand, within AO356_06790at 1499.300 kb on - strand, within AO356_06790at 1499.494 kb on + strand, within AO356_06790at 1499.495 kb on - strand, within AO356_06790at 1499.609 kb on + strand, within AO356_06790at 1499.609 kb on + strand, within AO356_06790at 1499.610 kb on - strand, within AO356_06790at 1499.610 kb on - strand, within AO356_06790at 1499.701 kb on + strand, within AO356_06790at 1499.701 kb on + strand, within AO356_06790at 1499.701 kb on + strand, within AO356_06790at 1499.702 kb on - strand, within AO356_06790at 1500.044 kb on + strandat 1500.044 kb on + strandat 1500.045 kb on - strandat 1500.045 kb on - strandat 1500.045 kb on - strandat 1500.045 kb on - strandat 1500.201 kb on - strandat 1500.947 kb on + strand, within AO356_06795at 1500.947 kb on + strand, within AO356_06795at 1500.948 kb on - strand, within AO356_06795at 1500.953 kb on + strand, within AO356_06795at 1501.065 kb on - strand, within AO356_06795at 1501.100 kb on + strand, within AO356_06795at 1501.195 kb on - strand, within AO356_06795at 1501.195 kb on - strand, within AO356_06795at 1501.195 kb on - strand, within AO356_06795at 1501.345 kb on + strand, within AO356_06795at 1501.346 kb on - strand, within AO356_06795at 1501.352 kb on + strand, within AO356_06795at 1501.352 kb on + strand, within AO356_06795at 1501.352 kb on + strand, within AO356_06795at 1501.353 kb on - strand, within AO356_06795at 1501.353 kb on - strand, within AO356_06795at 1501.458 kb on - strand, within AO356_06795at 1501.458 kb on - strand, within AO356_06795at 1501.458 kb on - strand, within AO356_06795at 1501.526 kb on - strand, within AO356_06795at 1501.564 kb on + strand, within AO356_06795at 1501.564 kb on + strand, within AO356_06795at 1501.610 kb on + strand, within AO356_06795at 1501.610 kb on + strand, within AO356_06795at 1501.611 kb on - strand, within AO356_06795at 1501.648 kb on + strand, within AO356_06795at 1501.649 kb on - strand, within AO356_06795at 1501.649 kb on - strand, within AO356_06795at 1501.664 kb on + strand, within AO356_06795at 1501.664 kb on + strand, within AO356_06795at 1501.664 kb on + strand, within AO356_06795at 1501.742 kb on + strand, within AO356_06795at 1501.743 kb on - strand, within AO356_06795at 1501.743 kb on - strand, within AO356_06795at 1501.743 kb on - strand, within AO356_06795at 1501.751 kb on + strand, within AO356_06795at 1501.781 kb on + strand, within AO356_06795at 1501.781 kb on + strand, within AO356_06795at 1501.781 kb on + strand, within AO356_06795at 1501.781 kb on + strand, within AO356_06795at 1501.781 kb on + strand, within AO356_06795at 1501.781 kb on + strand, within AO356_06795at 1501.782 kb on - strand, within AO356_06795at 1501.782 kb on - strand, within AO356_06795at 1501.898 kb on + strand, within AO356_06795at 1501.899 kb on - strand, within AO356_06795at 1501.899 kb on - strand, within AO356_06795at 1501.899 kb on - strand, within AO356_06795at 1502.070 kb on - strand, within AO356_06795at 1502.105 kb on + strand, within AO356_06795at 1502.213 kb on + strandat 1502.213 kb on + strandat 1502.213 kb on + strandat 1502.214 kb on - strandat 1502.214 kb on - strandat 1502.410 kb on + strandat 1502.411 kb on - strandat 1502.411 kb on - strandat 1502.411 kb on - strandat 1502.419 kb on + strandat 1502.420 kb on - strandat 1502.420 kb on - strandat 1502.420 kb on - strandat 1502.420 kb on - strandat 1502.420 kb on - strandat 1502.633 kb on - strand, within AO356_06800at 1502.633 kb on - strand, within AO356_06800at 1502.862 kb on - strand, within AO356_06800at 1502.902 kb on + strand, within AO356_06800at 1502.902 kb on + strand, within AO356_06800at 1502.902 kb on + strand, within AO356_06800at 1502.902 kb on + strand, within AO356_06800at 1502.903 kb on - strand, within AO356_06800at 1502.903 kb on - strand, within AO356_06800at 1502.903 kb on - strand, within AO356_06800at 1502.903 kb on - strand, within AO356_06800at 1502.903 kb on - strand, within AO356_06800at 1503.165 kb on - strandat 1503.195 kb on - strandat 1503.269 kb on - strandat 1503.278 kb on + strandat 1503.279 kb on - strandat 1503.297 kb on - strandat 1503.316 kb on + strandat 1503.316 kb on + strandat 1503.316 kb on + strandat 1503.352 kb on + strandat 1503.352 kb on + strandat 1503.354 kb on + strandat 1503.354 kb on + strandat 1503.355 kb on - strandat 1503.355 kb on - strandat 1503.355 kb on - strandat 1503.398 kb on + strandat 1503.399 kb on - strandat 1503.399 kb on - strandat 1503.399 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 37C
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1,499,174 + AO356_06790 0.63 -1.2
1,499,191 + AO356_06790 0.64 +0.4
1,499,192 - AO356_06790 0.64 +0.0
1,499,192 - AO356_06790 0.64 -0.8
1,499,299 + AO356_06790 0.68 +0.5
1,499,299 + AO356_06790 0.68 +0.3
1,499,300 - AO356_06790 0.68 +0.1
1,499,494 + AO356_06790 0.77 -0.3
1,499,495 - AO356_06790 0.77 +0.3
1,499,609 + AO356_06790 0.82 +0.7
1,499,609 + AO356_06790 0.82 -0.6
1,499,610 - AO356_06790 0.82 +0.2
1,499,610 - AO356_06790 0.82 +0.3
1,499,701 + AO356_06790 0.86 +0.1
1,499,701 + AO356_06790 0.86 -0.2
1,499,701 + AO356_06790 0.86 +0.1
1,499,702 - AO356_06790 0.86 +0.0
1,500,044 + +0.9
1,500,044 + -1.3
1,500,045 - -0.7
1,500,045 - -0.5
1,500,045 - +0.1
1,500,045 - +0.7
1,500,201 - +0.5
1,500,947 + AO356_06795 0.38 +0.2
1,500,947 + AO356_06795 0.38 +0.1
1,500,948 - AO356_06795 0.38 +0.9
1,500,953 + AO356_06795 0.38 +0.3
1,501,065 - AO356_06795 0.43 +0.7
1,501,100 + AO356_06795 0.44 +0.4
1,501,195 - AO356_06795 0.48 +0.2
1,501,195 - AO356_06795 0.48 +0.0
1,501,195 - AO356_06795 0.48 -0.7
1,501,345 + AO356_06795 0.55 -0.2
1,501,346 - AO356_06795 0.55 +0.8
1,501,352 + AO356_06795 0.55 -0.0
1,501,352 + AO356_06795 0.55 +0.9
1,501,352 + AO356_06795 0.55 +0.5
1,501,353 - AO356_06795 0.55 -0.5
1,501,353 - AO356_06795 0.55 +0.2
1,501,458 - AO356_06795 0.59 +0.7
1,501,458 - AO356_06795 0.59 -0.1
1,501,458 - AO356_06795 0.59 +0.7
1,501,526 - AO356_06795 0.62 +0.4
1,501,564 + AO356_06795 0.64 +0.1
1,501,564 + AO356_06795 0.64 -0.0
1,501,610 + AO356_06795 0.66 +0.8
1,501,610 + AO356_06795 0.66 -0.5
1,501,611 - AO356_06795 0.66 +0.4
1,501,648 + AO356_06795 0.67 +1.0
1,501,649 - AO356_06795 0.67 +0.3
1,501,649 - AO356_06795 0.67 -0.4
1,501,664 + AO356_06795 0.68 +0.3
1,501,664 + AO356_06795 0.68 -0.1
1,501,664 + AO356_06795 0.68 -0.2
1,501,742 + AO356_06795 0.71 -0.7
1,501,743 - AO356_06795 0.71 -2.1
1,501,743 - AO356_06795 0.71 +0.3
1,501,743 - AO356_06795 0.71 +0.1
1,501,751 + AO356_06795 0.72 +0.1
1,501,781 + AO356_06795 0.73 +1.1
1,501,781 + AO356_06795 0.73 +0.5
1,501,781 + AO356_06795 0.73 +0.5
1,501,781 + AO356_06795 0.73 +0.2
1,501,781 + AO356_06795 0.73 +0.3
1,501,781 + AO356_06795 0.73 -2.0
1,501,782 - AO356_06795 0.73 -0.3
1,501,782 - AO356_06795 0.73 +0.1
1,501,898 + AO356_06795 0.78 +0.0
1,501,899 - AO356_06795 0.78 +1.3
1,501,899 - AO356_06795 0.78 +0.2
1,501,899 - AO356_06795 0.78 -0.9
1,502,070 - AO356_06795 0.85 +0.4
1,502,105 + AO356_06795 0.86 -0.4
1,502,213 + -0.2
1,502,213 + +0.1
1,502,213 + -1.6
1,502,214 - +0.4
1,502,214 - -0.6
1,502,410 + +1.2
1,502,411 - -0.3
1,502,411 - +0.0
1,502,411 - +0.9
1,502,419 + +0.3
1,502,420 - +0.4
1,502,420 - +1.0
1,502,420 - +0.2
1,502,420 - +0.7
1,502,420 - +0.0
1,502,633 - AO356_06800 0.25 +1.5
1,502,633 - AO356_06800 0.25 +0.6
1,502,862 - AO356_06800 0.54 -0.2
1,502,902 + AO356_06800 0.59 +0.3
1,502,902 + AO356_06800 0.59 +0.6
1,502,902 + AO356_06800 0.59 -1.2
1,502,902 + AO356_06800 0.59 +0.6
1,502,903 - AO356_06800 0.59 +0.3
1,502,903 - AO356_06800 0.59 +0.6
1,502,903 - AO356_06800 0.59 -0.3
1,502,903 - AO356_06800 0.59 +0.3
1,502,903 - AO356_06800 0.59 -0.1
1,503,165 - +0.7
1,503,195 - +0.0
1,503,269 - -0.2
1,503,278 + +1.1
1,503,279 - -0.4
1,503,297 - -0.1
1,503,316 + +0.5
1,503,316 + -0.0
1,503,316 + +0.9
1,503,352 + +0.1
1,503,352 + +0.5
1,503,354 + -0.2
1,503,354 + +0.3
1,503,355 - +1.1
1,503,355 - +0.1
1,503,355 - -0.7
1,503,398 + -0.9
1,503,399 - -0.4
1,503,399 - +0.0
1,503,399 - +0.2

Or see this region's nucleotide sequence