Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_06695

Experiment: LB 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_06690 and AO356_06695 overlap by 4 nucleotidesAO356_06695 and AO356_06700 are separated by 108 nucleotidesAO356_06700 and AO356_06705 are separated by 230 nucleotidesAO356_06705 and AO356_06710 are separated by 44 nucleotides AO356_06690: AO356_06690 - queuine tRNA-ribosyltransferase, at 1,477,211 to 1,478,344 _06690 AO356_06695: AO356_06695 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 1,478,341 to 1,479,390 _06695 AO356_06700: AO356_06700 - tRNA-Leu, at 1,479,499 to 1,479,583 _06700 AO356_06705: AO356_06705 - hypothetical protein, at 1,479,814 to 1,480,143 _06705 AO356_06710: AO356_06710 - hypothetical protein, at 1,480,188 to 1,481,237 _06710 Position (kb) 1478 1479 1480Strain fitness (log2 ratio) -3 -2 -1 0 1at 1477.393 kb on - strand, within AO356_06690at 1477.420 kb on - strand, within AO356_06690at 1477.420 kb on - strand, within AO356_06690at 1477.420 kb on - strand, within AO356_06690at 1477.604 kb on - strand, within AO356_06690at 1478.156 kb on - strand, within AO356_06690at 1478.223 kb on + strand, within AO356_06690at 1478.224 kb on - strand, within AO356_06690at 1478.344 kb on + strandat 1478.344 kb on + strandat 1478.344 kb on + strandat 1478.345 kb on - strandat 1478.345 kb on - strandat 1478.345 kb on - strandat 1478.345 kb on - strandat 1478.403 kb on - strandat 1478.403 kb on - strandat 1478.944 kb on + strand, within AO356_06695at 1478.944 kb on + strand, within AO356_06695at 1478.944 kb on + strand, within AO356_06695at 1478.945 kb on - strand, within AO356_06695at 1478.945 kb on - strand, within AO356_06695at 1478.946 kb on + strand, within AO356_06695at 1478.946 kb on + strand, within AO356_06695at 1478.946 kb on + strand, within AO356_06695at 1478.946 kb on + strand, within AO356_06695at 1478.946 kb on + strand, within AO356_06695at 1478.947 kb on - strand, within AO356_06695at 1478.947 kb on - strand, within AO356_06695at 1478.947 kb on - strand, within AO356_06695at 1478.947 kb on - strand, within AO356_06695at 1478.947 kb on - strand, within AO356_06695at 1478.947 kb on - strand, within AO356_06695at 1478.947 kb on - strand, within AO356_06695at 1478.948 kb on + strand, within AO356_06695at 1478.948 kb on + strand, within AO356_06695at 1478.948 kb on + strand, within AO356_06695at 1478.948 kb on + strand, within AO356_06695at 1478.949 kb on - strand, within AO356_06695at 1478.949 kb on - strand, within AO356_06695at 1478.949 kb on - strand, within AO356_06695at 1478.949 kb on - strand, within AO356_06695at 1478.949 kb on - strand, within AO356_06695at 1478.949 kb on - strand, within AO356_06695at 1478.949 kb on - strand, within AO356_06695at 1479.211 kb on - strand, within AO356_06695at 1479.372 kb on + strandat 1479.863 kb on - strand, within AO356_06705at 1479.863 kb on - strand, within AO356_06705at 1479.967 kb on - strand, within AO356_06705at 1479.967 kb on - strand, within AO356_06705at 1479.967 kb on - strand, within AO356_06705at 1480.086 kb on - strand, within AO356_06705at 1480.086 kb on - strand, within AO356_06705at 1480.110 kb on - strand, within AO356_06705at 1480.110 kb on - strand, within AO356_06705at 1480.142 kb on - strandat 1480.183 kb on - strandat 1480.183 kb on - strandat 1480.217 kb on + strandat 1480.217 kb on + strandat 1480.224 kb on - strandat 1480.300 kb on + strand, within AO356_06710at 1480.301 kb on - strand, within AO356_06710at 1480.326 kb on + strand, within AO356_06710at 1480.326 kb on + strand, within AO356_06710at 1480.327 kb on - strand, within AO356_06710at 1480.327 kb on - strand, within AO356_06710at 1480.327 kb on - strand, within AO356_06710at 1480.368 kb on - strand, within AO356_06710at 1480.368 kb on - strand, within AO356_06710

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 37C
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1,477,393 - AO356_06690 0.16 -1.1
1,477,420 - AO356_06690 0.18 +0.4
1,477,420 - AO356_06690 0.18 -2.2
1,477,420 - AO356_06690 0.18 -1.5
1,477,604 - AO356_06690 0.35 -1.4
1,478,156 - AO356_06690 0.83 -0.7
1,478,223 + AO356_06690 0.89 -1.3
1,478,224 - AO356_06690 0.89 -2.0
1,478,344 + -2.2
1,478,344 + -1.6
1,478,344 + -1.3
1,478,345 - +1.2
1,478,345 - +0.2
1,478,345 - +0.5
1,478,345 - +0.2
1,478,403 - -0.7
1,478,403 - -1.6
1,478,944 + AO356_06695 0.57 +0.2
1,478,944 + AO356_06695 0.57 +0.3
1,478,944 + AO356_06695 0.57 -1.1
1,478,945 - AO356_06695 0.58 +1.4
1,478,945 - AO356_06695 0.58 +0.0
1,478,946 + AO356_06695 0.58 -0.7
1,478,946 + AO356_06695 0.58 -1.8
1,478,946 + AO356_06695 0.58 -2.9
1,478,946 + AO356_06695 0.58 -2.1
1,478,946 + AO356_06695 0.58 +0.1
1,478,947 - AO356_06695 0.58 -0.9
1,478,947 - AO356_06695 0.58 +0.1
1,478,947 - AO356_06695 0.58 -0.5
1,478,947 - AO356_06695 0.58 -0.4
1,478,947 - AO356_06695 0.58 -0.2
1,478,947 - AO356_06695 0.58 -0.1
1,478,947 - AO356_06695 0.58 -0.3
1,478,948 + AO356_06695 0.58 -0.9
1,478,948 + AO356_06695 0.58 +0.9
1,478,948 + AO356_06695 0.58 -1.1
1,478,948 + AO356_06695 0.58 +0.1
1,478,949 - AO356_06695 0.58 -0.6
1,478,949 - AO356_06695 0.58 +0.2
1,478,949 - AO356_06695 0.58 -0.0
1,478,949 - AO356_06695 0.58 +0.3
1,478,949 - AO356_06695 0.58 +1.3
1,478,949 - AO356_06695 0.58 -0.7
1,478,949 - AO356_06695 0.58 +0.1
1,479,211 - AO356_06695 0.83 -0.2
1,479,372 + +0.1
1,479,863 - AO356_06705 0.15 -1.1
1,479,863 - AO356_06705 0.15 -0.6
1,479,967 - AO356_06705 0.46 +0.6
1,479,967 - AO356_06705 0.46 +0.2
1,479,967 - AO356_06705 0.46 -0.5
1,480,086 - AO356_06705 0.82 +0.7
1,480,086 - AO356_06705 0.82 +0.7
1,480,110 - AO356_06705 0.90 -0.3
1,480,110 - AO356_06705 0.90 -0.1
1,480,142 - +0.5
1,480,183 - +0.1
1,480,183 - +0.2
1,480,217 + +0.2
1,480,217 + +0.4
1,480,224 - +0.3
1,480,300 + AO356_06710 0.11 +0.8
1,480,301 - AO356_06710 0.11 +0.2
1,480,326 + AO356_06710 0.13 +0.0
1,480,326 + AO356_06710 0.13 -0.1
1,480,327 - AO356_06710 0.13 -1.0
1,480,327 - AO356_06710 0.13 +0.9
1,480,327 - AO356_06710 0.13 -0.2
1,480,368 - AO356_06710 0.17 -0.4
1,480,368 - AO356_06710 0.17 +0.1

Or see this region's nucleotide sequence