Experiment: LB 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_03350 and AO356_03355 are separated by 4 nucleotides AO356_03355 and AO356_03360 are separated by 14 nucleotides AO356_03360 and AO356_03365 are separated by 25 nucleotides
AO356_03350: AO356_03350 - glycosyl transferase, at 745,651 to 746,667
_03350
AO356_03355: AO356_03355 - hypothetical protein, at 746,672 to 747,628
_03355
AO356_03360: AO356_03360 - hypothetical protein, at 747,643 to 748,884
_03360
AO356_03365: AO356_03365 - UDP-N-acetylglucosamine 2-epimerase, at 748,910 to 749,974
_03365
Position (kb)
747
748
749 Strain fitness (log2 ratio)
-2
-1
0
1 at 746.705 kb on - strand at 746.705 kb on - strand at 746.705 kb on - strand at 746.705 kb on - strand at 746.706 kb on + strand at 746.706 kb on + strand at 746.706 kb on + strand at 746.707 kb on - strand at 746.837 kb on + strand, within AO356_03355 at 746.838 kb on - strand, within AO356_03355 at 746.875 kb on - strand, within AO356_03355 at 746.990 kb on - strand, within AO356_03355 at 746.992 kb on + strand, within AO356_03355 at 746.993 kb on - strand, within AO356_03355 at 747.093 kb on - strand, within AO356_03355 at 747.418 kb on + strand, within AO356_03355 at 747.440 kb on + strand, within AO356_03355 at 747.464 kb on + strand, within AO356_03355 at 747.504 kb on + strand, within AO356_03355 at 747.505 kb on - strand, within AO356_03355 at 747.542 kb on + strand at 747.543 kb on - strand at 747.543 kb on - strand at 747.552 kb on - strand at 747.581 kb on - strand at 747.597 kb on - strand at 747.600 kb on + strand at 747.676 kb on - strand at 747.676 kb on - strand at 747.878 kb on + strand, within AO356_03360 at 747.879 kb on - strand, within AO356_03360 at 747.895 kb on + strand, within AO356_03360 at 748.078 kb on - strand, within AO356_03360 at 748.509 kb on - strand, within AO356_03360 at 748.650 kb on + strand, within AO356_03360 at 748.653 kb on - strand, within AO356_03360 at 748.797 kb on - strand at 748.857 kb on + strand at 748.896 kb on + strand at 748.964 kb on + strand at 749.021 kb on + strand, within AO356_03365 at 749.305 kb on + strand, within AO356_03365 at 749.518 kb on + strand, within AO356_03365 at 749.533 kb on + strand, within AO356_03365 at 749.599 kb on + strand, within AO356_03365 at 749.602 kb on + strand, within AO356_03365 at 749.788 kb on + strand, within AO356_03365 at 749.792 kb on + strand, within AO356_03365 at 749.845 kb on + strand, within AO356_03365
Per-strain Table
Position Strand Gene LocusTag Fraction LB 37C remove 746,705 - +0.2 746,705 - -0.1 746,705 - -0.1 746,705 - +0.3 746,706 + -0.6 746,706 + -0.3 746,706 + -0.8 746,707 - -2.7 746,837 + AO356_03355 0.17 -1.2 746,838 - AO356_03355 0.17 -2.2 746,875 - AO356_03355 0.21 -0.9 746,990 - AO356_03355 0.33 +0.3 746,992 + AO356_03355 0.33 +0.5 746,993 - AO356_03355 0.34 -0.6 747,093 - AO356_03355 0.44 -0.6 747,418 + AO356_03355 0.78 +0.7 747,440 + AO356_03355 0.80 -1.4 747,464 + AO356_03355 0.83 -0.5 747,504 + AO356_03355 0.87 -1.2 747,505 - AO356_03355 0.87 -0.8 747,542 + -1.8 747,543 - -1.0 747,543 - -0.1 747,552 - -0.6 747,581 - -0.7 747,597 - -0.2 747,600 + -0.5 747,676 - -0.7 747,676 - -0.9 747,878 + AO356_03360 0.19 +0.5 747,879 - AO356_03360 0.19 -0.1 747,895 + AO356_03360 0.20 +0.9 748,078 - AO356_03360 0.35 -1.6 748,509 - AO356_03360 0.70 -1.6 748,650 + AO356_03360 0.81 -0.1 748,653 - AO356_03360 0.81 -0.3 748,797 - -1.0 748,857 + +1.5 748,896 + -0.2 748,964 + -0.5 749,021 + AO356_03365 0.10 +0.1 749,305 + AO356_03365 0.37 -0.1 749,518 + AO356_03365 0.57 -0.1 749,533 + AO356_03365 0.58 -0.1 749,599 + AO356_03365 0.65 +0.1 749,602 + AO356_03365 0.65 -0.2 749,788 + AO356_03365 0.82 -0.8 749,792 + AO356_03365 0.83 +0.4 749,845 + AO356_03365 0.88 -0.4
Or see this region's nucleotide sequence