Experiment: LB 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_02455 and AO356_02460 are separated by 11 nucleotides AO356_02460 and AO356_02465 are separated by 178 nucleotides AO356_02465 and AO356_02470 are separated by 24 nucleotides AO356_02470 and AO356_02475 overlap by 8 nucleotides
AO356_02455: AO356_02455 - (Fe-S)-binding protein, at 532,932 to 534,347
_02455
AO356_02460: AO356_02460 - hypothetical protein, at 534,359 to 534,898
_02460
AO356_02465: AO356_02465 - carbonate dehydratase, at 535,077 to 537,527
_02465
AO356_02470: AO356_02470 - cytochrome C oxidase Cbb3, at 537,552 to 537,770
_02470
AO356_02475: AO356_02475 - cytochrome biogenesis protein, at 537,763 to 538,446
_02475
Position (kb) 535
536
537
538 Strain fitness (log2 ratio) -1
0
1 at 534.084 kb on + strand, within AO356_02455 at 534.122 kb on + strand, within AO356_02455 at 534.122 kb on + strand, within AO356_02455 at 534.122 kb on + strand, within AO356_02455 at 534.122 kb on + strand, within AO356_02455 at 534.122 kb on + strand, within AO356_02455 at 534.122 kb on + strand, within AO356_02455 at 534.123 kb on - strand, within AO356_02455 at 534.126 kb on + strand, within AO356_02455 at 534.126 kb on + strand, within AO356_02455 at 534.126 kb on + strand, within AO356_02455 at 534.126 kb on + strand, within AO356_02455 at 534.126 kb on + strand, within AO356_02455 at 534.126 kb on + strand, within AO356_02455 at 534.126 kb on + strand, within AO356_02455 at 534.127 kb on - strand, within AO356_02455 at 534.127 kb on - strand, within AO356_02455 at 534.204 kb on + strand, within AO356_02455 at 534.301 kb on + strand at 534.301 kb on + strand at 534.301 kb on + strand at 534.301 kb on + strand at 534.301 kb on + strand at 534.301 kb on + strand at 534.389 kb on + strand at 534.503 kb on + strand, within AO356_02460 at 534.504 kb on - strand, within AO356_02460 at 534.504 kb on - strand, within AO356_02460 at 534.896 kb on + strand at 534.896 kb on + strand at 534.896 kb on + strand at 534.988 kb on + strand at 535.033 kb on + strand at 535.855 kb on - strand, within AO356_02465 at 536.179 kb on - strand, within AO356_02465 at 536.566 kb on + strand, within AO356_02465 at 536.567 kb on - strand, within AO356_02465 at 537.354 kb on + strand at 537.565 kb on - strand at 537.565 kb on - strand at 537.940 kb on + strand, within AO356_02475 at 537.940 kb on + strand, within AO356_02475
Per-strain Table
Position Strand Gene LocusTag Fraction LB 37C remove 534,084 + AO356_02455 0.81 +0.2 534,122 + AO356_02455 0.84 +1.1 534,122 + AO356_02455 0.84 +0.9 534,122 + AO356_02455 0.84 -0.4 534,122 + AO356_02455 0.84 +0.1 534,122 + AO356_02455 0.84 +0.9 534,122 + AO356_02455 0.84 -0.2 534,123 - AO356_02455 0.84 +0.8 534,126 + AO356_02455 0.84 -0.1 534,126 + AO356_02455 0.84 +0.4 534,126 + AO356_02455 0.84 -1.2 534,126 + AO356_02455 0.84 +1.0 534,126 + AO356_02455 0.84 -0.1 534,126 + AO356_02455 0.84 -0.9 534,126 + AO356_02455 0.84 +0.7 534,127 - AO356_02455 0.84 -1.6 534,127 - AO356_02455 0.84 -0.6 534,204 + AO356_02455 0.90 +0.3 534,301 + -1.2 534,301 + +0.0 534,301 + +0.1 534,301 + -1.1 534,301 + -0.6 534,301 + -0.4 534,389 + -0.2 534,503 + AO356_02460 0.27 +0.6 534,504 - AO356_02460 0.27 -1.2 534,504 - AO356_02460 0.27 -0.3 534,896 + -0.5 534,896 + +1.1 534,896 + -0.7 534,988 + +0.3 535,033 + -0.8 535,855 - AO356_02465 0.32 -0.7 536,179 - AO356_02465 0.45 -1.2 536,566 + AO356_02465 0.61 +0.4 536,567 - AO356_02465 0.61 +0.5 537,354 + -1.0 537,565 - -0.1 537,565 - -0.1 537,940 + AO356_02475 0.26 +0.1 537,940 + AO356_02475 0.26 -1.2
Or see this region's nucleotide sequence